View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19848_high_6 (Length: 466)
Name: NF19848_high_6
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19848_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 17 - 456
Target Start/End: Complemental strand, 35356907 - 35356465
Alignment:
| Q |
17 |
acatttttcttgcataaagcattagcaatggcatacgcaaccttattgaacttgcctcgaagaagcacttgatttgtccctttgggaatgttgttcaaca |
116 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35356907 |
acattttttctgcataaagcattagcaatggcaaacgcaaccttattgaacttgcctcgaagaagcacttgatttgtccctttggggatgttgttcaaca |
35356808 |
T |
|
| Q |
117 |
cagttgcagcagctaggctacttccatctacaacttttatcttcaattgtggtaaccttccaatataaagttcacagtgtgcattcagctgatgtttctg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35356807 |
cagttgcagcagctaggctacttccatctacaacttttatcttcaattgtggtaaccttccaatataaagttcacagtgtgcattcagctgatgtttctg |
35356708 |
T |
|
| Q |
217 |
cacccatcaaggttattcaaatcaaaaatcatca-tctacttcgaattccataaagctatatttcagatttatcctatttatcggaacgtattttttgat |
315 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35356707 |
cacccatcatggttattcaaatcaaaaatcatcattctacttcgaattccataaagctatatttcagatttatcctatttatcggaacgtattttttgat |
35356608 |
T |
|
| Q |
316 |
gacacaaatctatcgaaacatattttcggatttccttttttgtgctaatctatcggattccatccttcgaatgac--nnnnnnnnngggttgaacggttt |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
35356607 |
gacacaaatctatcgaaacatattttcggatttccttttttgtgctaatctatcggattccatccttcgaatgactttttttttttgggttgaacgattt |
35356508 |
T |
|
| Q |
414 |
gagctccctaaacaaataaggtcattacttttctcaccctttg |
456 |
Q |
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||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
35356507 |
gagctccctaaacaaataaggtcgttacttttctcatcctttg |
35356465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 35382121 - 35381859
Alignment:
| Q |
16 |
cacatttttcttgcataaagcattagcaatggcatacgcaaccttattgaacttgcctcgaagaagcacttgatttgtccctttgggaatgttgttcaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35382121 |
cacatttttcttgcataaagcattagcaatggcaaacgcaaccttattgaacttgcctcgaagaagcacttgatttgtccctttgggaatgttgttcaac |
35382022 |
T |
|
| Q |
116 |
acagttgcagcagctaggctacttccatctacaacttttatcttcaattgtggtaaccttccaatataaagttcacagtgtgcattcagctgatgtttct |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35382021 |
acagttgcagcagctaggctacttccatctacaacttttatcttcaattgtgggaaccttcgaatataaagttcacagtgtgcattcagctgatgtttct |
35381922 |
T |
|
| Q |
216 |
gcacccatcaaggttattcaaatcaaaaatcatca-tctacttcgaattccataaagctatat |
277 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35381921 |
gcacccatcatggttattcaaatcaaaaatcatcattctacttcgaattccataaagctatat |
35381859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 35372131 - 35371883
Alignment:
| Q |
17 |
acatttttcttgcataaagcattagcaatggcatacgcaaccttattgaacttgcctcgaagaagcacttgatttgtccctttgggaatgttgttcaaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35372131 |
acatttttcttgcataaagcattagcgatgacaaacgcaaccttattgaacttgcctcgaagaagcacttgatttgtccctttgggaatgttgttcaaca |
35372032 |
T |
|
| Q |
117 |
cagttgcagcagctaggctacttccatctacaacttttatcttcaattgtggtaaccttccaatataaagttcacagtgtgcattcagctgatgtttctg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || |||| |||||||| ||||| |
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| T |
35372031 |
cagttgcagcagctaggctacttccatctacaacttttatcttcaattgtggtaaccttccaatataatgttcatggcgttcattaagctgatgattctg |
35371932 |
T |
|
| Q |
217 |
cacccatc-aaggttattcaaatcaaaaatcatca-tctacttcgaatt |
263 |
Q |
| |
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|| ||||| |||||||||||||| ||||||||| | ||||||||||||| |
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| T |
35371931 |
catccatcaaaggttattcaaataaaaaatcattattctacttcgaatt |
35371883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 19628587 - 19628769
Alignment:
| Q |
17 |
acatttttcttgcataaagcattagcaatggcatacgcaaccttattgaacttgcctcgaagaagcacttgatttgtccctttgggaatgttgttcaaca |
116 |
Q |
| |
|
|||||||| |||||||||||||| |||||| | ||||||||||| |||||||| | || ||||||||||| |||||||||||||||||||| | || |
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| T |
19628587 |
acatttttactgcataaagcattaataatggccaaagcaaccttattaaacttgcccctgagtagcacttgattggtccctttgggaatgttgttaagca |
19628686 |
T |
|
| Q |
117 |
cagttgcagcagctaggctacttccatctacaacttttatcttcaattgtggtaaccttccaatataaagttcacagtgtgca |
199 |
Q |
| |
|
|||| ||| || ||| |||||| |||||||||||||| ||||||| | ||| | |||| ||||||||| | | ||||||||| |
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| T |
19628687 |
cagtagcaacaactaagctactaccatctacaactttaatcttcagatttggaagcctttcaatataaactgcgcagtgtgca |
19628769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 19686038 - 19685856
Alignment:
| Q |
17 |
acatttttcttgcataaagcattagcaatggcatacgcaaccttattgaacttgcctcgaagaagcacttgatttgtccctttgggaatgttgttcaaca |
116 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| | ||||||||||| ||||| || | || ||||||||||| ||||| |||||||||||||| | || |
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| T |
19686038 |
acatttttactgcataaagcattagtaatggccaaagcaaccttattaaactttcccctgagtagcacttgattggtcccattgggaatgttgttaagca |
19685939 |
T |
|
| Q |
117 |
cagttgcagcagctaggctacttccatctacaacttttatcttcaattgtggtaaccttccaatataaagttcacagtgtgca |
199 |
Q |
| |
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|||| ||| || ||| |||||| |||||||||||||| ||||||| | | | | |||| ||||||||||| | ||||||||| |
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| T |
19685938 |
cagtagcaacaactaagctactaccatctacaactttaatcttcagattttgaagcctttcaatataaagtgcgcagtgtgca |
19685856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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