View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19848_low_1 (Length: 567)

Name: NF19848_low_1
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19848_low_1
NF19848_low_1
[»] chr5 (7 HSPs)
chr5 (18-564)||(2525260-2525806)
chr5 (106-198)||(10950137-10950229)
chr5 (106-198)||(43405444-43405536)
chr5 (123-198)||(5413791-5413866)
chr5 (109-198)||(34368411-34368500)
chr5 (141-198)||(39246659-39246716)
chr5 (209-241)||(13975493-13975525)
[»] chr4 (2 HSPs)
chr4 (108-198)||(50481584-50481674)
chr4 (108-198)||(43771177-43771267)
[»] chr1 (8 HSPs)
chr1 (108-198)||(8741262-8741352)
chr1 (108-198)||(28218087-28218177)
chr1 (108-198)||(41948185-41948275)
chr1 (141-198)||(2225275-2225332)
chr1 (108-198)||(26980301-26980391)
chr1 (141-198)||(36566947-36567004)
chr1 (142-194)||(24436540-24436592)
chr1 (108-196)||(30678950-30679038)
[»] chr2 (7 HSPs)
chr2 (108-195)||(2122849-2122936)
chr2 (106-198)||(9470132-9470224)
chr2 (108-198)||(12989242-12989332)
chr2 (108-198)||(44274285-44274375)
chr2 (106-198)||(34142176-34142268)
chr2 (110-174)||(7919311-7919375)
chr2 (110-198)||(38464214-38464302)
[»] chr3 (6 HSPs)
chr3 (108-198)||(18427189-18427279)
chr3 (112-198)||(48351487-48351573)
chr3 (108-198)||(24734756-24734846)
chr3 (141-241)||(5452132-5452231)
chr3 (108-198)||(41451934-41452024)
chr3 (108-198)||(46160998-46161088)
[»] chr6 (4 HSPs)
chr6 (106-198)||(32112754-32112846)
chr6 (108-198)||(34905387-34905477)
chr6 (112-198)||(445869-445955)
chr6 (108-198)||(31116163-31116253)
[»] chr7 (12 HSPs)
chr7 (113-196)||(32605384-32605467)
chr7 (108-198)||(11824122-11824212)
chr7 (108-198)||(14795182-14795272)
chr7 (108-198)||(15242174-15242264)
chr7 (112-198)||(10934008-10934094)
chr7 (108-198)||(11692230-11692320)
chr7 (108-198)||(27888333-27888423)
chr7 (108-198)||(32205127-32205217)
chr7 (141-194)||(12271041-12271093)
chr7 (141-198)||(17354599-17354656)
chr7 (141-198)||(22189990-22190047)
chr7 (142-198)||(7775051-7775107)
[»] scaffold0018 (1 HSPs)
scaffold0018 (108-198)||(27863-27953)
[»] chr8 (9 HSPs)
chr8 (108-197)||(1977212-1977301)
chr8 (106-198)||(31301166-31301257)
chr8 (108-198)||(17499272-17499362)
chr8 (109-198)||(8914822-8914911)
chr8 (113-198)||(35797446-35797531)
chr8 (142-198)||(5979931-5979987)
chr8 (110-194)||(8903907-8903991)
chr8 (114-198)||(9952802-9952886)
chr8 (138-198)||(35689531-35689591)


Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 564
Target Start/End: Complemental strand, 2525806 - 2525260
Alignment:
Q  18 ataatgaagtcatacctcagtccacttaactttatgtataccccgcgagagtagtgctagcaccactatttattaaacattttatataat--tcactctc 115  Q
    |||| ||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  2525806 ataaagaagtcatacctc-gtcctcttaactttaagtataccccgcgagagtagtgctagcaccactatttattaaacattctatataatattcactctc 2525708  T
Q  116 ttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaatnnnnnnngcaaatgtta 215  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||        | | |||||    
T  2525707 ttattaatttaaatcattatgtatttacactttgaaaacagaaatcacacaaagtggtgatagatacattgatttcatccaataaaaaaa-cgagtgtta 2525609  T
Q  216 aagagagtgttaaaaaatgagtgttgttgctagcactcttctattctttaaatacaaaattctaattcccttttcttttcctcttcattagcgtcattat 315  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2525608 aagagagtgttaaaaaatgagtgttgttgctaacactcttctattctttaaatacaaaattctaattcccttttcttttcctcttcattagggtcattat 2525509  T
Q  316 cttcattaatgtcaaaaccttgaggaaaaccttcgcccaagaaaatgaaacaaaaccagaacgattcaatcaataattaattataacaacttaatattca 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2525508 cttcattaatgtcaaaaccttgaggaaaaccttcgcccaagaaaatgaaacaaaaccagaacgattcaatcaataattaattataacaacttaatattca 2525409  T
Q  416 aatttgataaataaacaagcaaaaagtataaattagattcaagttgggaatctgtggttctaaaatattgttgaaactaatagctcttgaaaatggaacc 515  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  2525408 aatttgataaataaacaagcaaaaagtataaattaggttcaagttgggaatttgtggttctaaaatgttgttgaaactaatagctcttgaaaatggaacc 2525309  T
Q  516 accacgataaactcttaaaaaatcatgatcgattttcttcggtgttaat 564  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2525308 accacgataaactcttaaaaaatcatgttcgattttcttcggtgttaat 2525260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 10950229 - 10950137
Alignment:
Q  106 attcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    ||||| |||||||||| ||||||||||||||    || |||||||||| |||| ||| ||||| |||||  | ||||||||||||||| ||||    
T  10950229 attcattctcttattagtttaaatcattatgagtctatactttgaaaatagaatccatacaaaatggtgggacatacattgatttcattcaat 10950137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 43405536 - 43405444
Alignment:
Q  106 attcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    ||||||||||||||| |||||||||||| ||    ||||||||| ||| ||||   | |||||||||||| | ||||||||||||||| ||||    
T  43405536 attcactctcttattgatttaaatcattgtgggtctacactttggaaatagaacatatacaaagtggtgagacatacattgatttcattcaat 43405444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 5413791 - 5413866
Alignment:
Q  123 tttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    ||||||||||||||    ||||||||| |||  ||| |||||||||||||||  | ||||||||||||||||||||    
T  5413791 tttaaatcattatgggtctacactttgtaaattgaacccacacaaagtggtgggacatacattgatttcatccaat 5413866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 34368500 - 34368411
Alignment:
Q  109 cactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    ||||||||||||  ||||||||||| ||    |||||||||||||  ||| |||||||||||||||  | |||||||| ||| |||||||    
T  34368500 cactctcttattggtttaaatcattgtgggtctacactttgaaaaatgaacccacacaaagtggtggaacatacattggttttatccaat 34368411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 39246716 - 39246659
Alignment:
Q  141 tacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||||||| |||  ||||||||||||||  | |||||||||||| |||||||    
T  39246716 tacactttgaaaactgaactcacacaaagtggtgggacatacattgattttatccaat 39246659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 13975493 - 13975525
Alignment:
Q  209 aatgttaaagagagtgttaaaaaatgagtgttg 241  Q
    |||||||||||||||||| ||||||||||||||    
T  13975493 aatgttaaagagagtgttcaaaaatgagtgttg 13975525  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 50481584 - 50481674
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||||||  ||||||| ||| |||   ||||||||||||| |||||||| |||||||||||| | |||| |||||||||||||||    
T  50481584 tcactctcttattggtttaaatgattgtgtgtctacactttgaaaatagaaaccatacaaagtggtgagacatactttgatttcatccaat 50481674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 43771267 - 43771177
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||||||  ||||||||||| ||    |||||||||||||  ||| ||||||| |||||||  | ||||||||||||||||||||    
T  43771267 tcactctcttattggtttaaatcattgtgggtctacactttgaaaattgaacccacacagagtggtgggacatacattgatttcatccaat 43771177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 8741262 - 8741352
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||||||| ||||||||||| |||  ||| ||||||||||  ||| ||||||||| | |||| | ||||||||||||||||||||    
T  8741262 tcactctcttattagtttaaatcattgtgtgtttatactttgaaaattgaacccacacaaattagtgagacatacattgatttcatccaat 8741352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 28218087 - 28218177
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    ||||| |||||||||||||||| | | ||    |||||||||||||  ||| |||||||||||||||| | ||||||||||||||||||||    
T  28218087 tcactatcttattaatttaaattactgtggttctacactttgaaaattgaatccacacaaagtggtgagacatacattgatttcatccaat 28218177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 41948185 - 41948275
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    ||||||||||||| |||||||||||| || | ||||||||||||||  ||| | ||||||||||||   | |||||||||||| |||||||    
T  41948185 tcactctcttattgatttaaatcattgtggatttacactttgaaaattgaaccaacacaaagtggtagaatatacattgattttatccaat 41948275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 2225332 - 2225275
Alignment:
Q  141 tacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    ||||||||| |||| ||| |||||||||||||||  | ||||||||||||||||||||    
T  2225332 tacactttgtaaaccgaacccacacaaagtggtgggacatacattgatttcatccaat 2225275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 26980301 - 26980391
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    ||||||||||||| |||||||||||| || |  || | ||||||||  |||  |||||||| |||||  | ||||||||||||||||||||    
T  26980301 tcactctcttattgatttaaatcattgtggatgtatattttgaaaattgaactcacacaaaatggtgggacatacattgatttcatccaat 26980391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 36567004 - 36566947
Alignment:
Q  141 tacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    ||||||||||||| |||| ||| | |||||| ||| | ||||||||||||||||||||    
T  36567004 tacactttgaaaatagaacccaaataaagtgatgagacatacattgatttcatccaat 36566947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 24436540 - 24436592
Alignment:
Q  142 acactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatc 194  Q
    |||||||||||| |||| ||||| |||||||||  | ||||||||||||||||    
T  24436540 acactttgaaaatagaacccacataaagtggtgggatatacattgatttcatc 24436592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 30678950 - 30679038
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatcca 196  Q
    |||||||||||||   |||||||||| ||    |||||||||||||  ||| |||||||||||||||  | |||||||||||| |||||    
T  30678950 tcactctcttattggcttaaatcattgtgagtctacactttgaaaattgaacccacacaaagtggtgggacatacattgattttatcca 30679038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 195
Target Start/End: Complemental strand, 2122936 - 2122849
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatcc 195  Q
    ||||||||||||| |||||||||||  || ||||||||| |  ||| ||||  || |||||||||||||| |||||||||||||||||    
T  2122936 tcactctcttattgatttaaatcatagtgaacttacactctagaaatagaatgcatacaaagtggtgatacatacattgatttcatcc 2122849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 9470224 - 9470132
Alignment:
Q  106 attcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||||||||  ||||||||||| ||    |||||||||||||  ||| ||| |||||||||||  | ||||||||||||||||||||    
T  9470224 attcactctcttattggtttaaatcattgtgggtctacactttgaaaattgaacccaaacaaagtggtgggacatacattgatttcatccaat 9470132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 12989332 - 12989242
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||||||  ||||||||||| ||    ||||||| | ||| |||| ||| |||||||||||  | ||||||||||||||||||||    
T  12989332 tcactctcttattggtttaaatcattgtgggtctacacttcggaaatagaatccatacaaagtggtgggacatacattgatttcatccaat 12989242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 44274375 - 44274285
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    ||||||| |||||  ||||||||||| || |  ||||||||||||   ||| |||||||||||||||  | |||||||||||| |||||||    
T  44274375 tcactctgttattggtttaaatcattgtggatctacactttgaaagttgaacccacacaaagtggtgggacatacattgattttatccaat 44274285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 34142176 - 34142268
Alignment:
Q  106 attcactctcttattaatttaaatcattatgtact-tacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||||||||  |||||| |||| || ||| |||||||||||||  ||| ||||||||||| |||| | ||||||  ||||||||||||    
T  34142176 attcactctcttattggtttaaaccattgtg-actctacactttgaaaattgaacccacacaaagtagtgagacatacatgaatttcatccaat 34142268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 7919311 - 7919375
Alignment:
Q  110 actctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtg 174  Q
    |||||||||||  ||||||||||| || |  |||||||||||||  ||| |||||||||||||||    
T  7919311 actctcttattggtttaaatcattgtggatctacactttgaaaattgaatccacacaaagtggtg 7919375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 38464302 - 38464214
Alignment:
Q  110 actctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||||  ||||||||||| ||    |||||||||||||  ||| |||| ||||||| ||| | ||||||||||||||| ||||    
T  38464302 actctcttattggtttaaatcattgtgggtctacactttgaaaattgaacccacgcaaagtgatgagacatacattgatttcatacaat 38464214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 18427189 - 18427279
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||||||  ||||||||||| ||    ||||||||||||| |||| ||||||||| |||||  | ||||||||||||||||||||    
T  18427189 tcactctcttattggtttaaatcattgtgggtctacactttgaaaatagaacccacacaaaatggtgggacatacattgatttcatccaat 18427279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 48351573 - 48351487
Alignment:
Q  112 tctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    ||||||||| ||||||||||||||| |  |||||||||||||  ||| ||||||||||| |||| | ||| |||||||| |||||||    
T  48351573 tctcttattgatttaaatcattatggatatacactttgaaaattgaacccacacaaagtagtgagacatatattgattttatccaat 48351487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 24734846 - 24734756
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||||||  ||||||||||| ||  | ||| |||||||||  ||| |||||||||||||||  | |||| |||||||||||||||    
T  24734846 tcactctcttattggtttaaatcattgtgggcctactctttgaaaattgaacccacacaaagtggtgggacatactttgatttcatccaat 24734756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 241
Target Start/End: Original strand, 5452132 - 5452231
Alignment:
Q  141 tacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaatnnnnnnngcaaatgttaaagagagtgttaaaaaatgagtgtt 240  Q
    ||||||| |||||  ||| |||||||||||||||  | ||||||||||||||||||||       |  |||||||||||||||||| |||| ||||||||    
T  5452132 tacacttagaaaattgaatccacacaaagtggtgggaaatacattgatttcatccaat-aaaagagtgaatgttaaagagagtgttgaaaagtgagtgtt 5452230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 41451934 - 41452024
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||||||  ||||||||||| ||    ||| |||||||||  ||| |||||||||||||||  | |||| |||||||||||||||    
T  41451934 tcactctcttattggtttaaatcattgtgggtctactctttgaaaattgaacccacacaaagtggtgggacatactttgatttcatccaat 41452024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 46161088 - 46160998
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||||||  |||||||||||||| |  ||||||||| ||| |||| | ||||||||||||   | ||  ||||||||||||||||    
T  46161088 tcactctcttattggtttaaatcattatggatctacactttggaaatagaaccaacacaaagtggtcggacatgtattgatttcatccaat 46160998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 32112754 - 32112846
Alignment:
Q  106 attcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||||||||  ||||||||||| || |  ||||||||||||| | || ||||||||| |||||  | || |||||||||||||||||    
T  32112754 attcactctcttattgttttaaatcattgtggatctacactttgaaaataaaacccacacaaaatggtgtgacatgcattgatttcatccaat 32112846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 34905477 - 34905387
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||||||  ||||||||||| ||    |||||||||||||  ||| ||| |||||||||||  | ||||||||||||||||||||    
T  34905477 tcactctcttattggtttaaatcattgtgggtctacactttgaaaattgaacccaaacaaagtggtgggacatacattgatttcatccaat 34905387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 445955 - 445869
Alignment:
Q  112 tctcttattaatttaaatcattatgtact-tacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||  ||||||||||| || ||| || ||||||||||  ||| |||||||||||||||  | ||||||||||||||||||||    
T  445955 tctcttattggtttaaatcattgtg-actctagactttgaaaattgaacccacacaaagtggtgtgacatacattgatttcatccaat 445869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 31116163 - 31116253
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||||||  ||||||||||| ||   |||||| ||| ||| ||||  |||||||||| |||  | ||||||||||||||||||||    
T  31116163 tcactctcttattggtttaaatcattgtgggtttacacattggaaatagaacacacacaaagtagtgggacatacattgatttcatccaat 31116253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 32605467 - 32605384
Alignment:
Q  113 ctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatcca 196  Q
    ||||||||||||||||||||| ||  | |||||||| ||||  ||| |||||||||||  ||| | ||||||||||||||||||    
T  32605467 ctcttattaatttaaatcattgtgagcctacactttaaaaattgaatccacacaaagtaatgagacatacattgatttcatcca 32605384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 11824212 - 11824122
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    ||||| ||||||| |||||||||||| ||   ||||||||||||||  ||| | ||||||| |||||  | ||||||||||||||||||||    
T  11824212 tcactttcttattgatttaaatcattgtgggtttacactttgaaaattgaagctacacaaaatggtgggacatacattgatttcatccaat 11824122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 14795272 - 14795182
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||||||| |||||||||||||| |  |||||||| ||||  ||| | ||| ||| |||||  | ||||||||||||||||||||    
T  14795272 tcactctcttattagtttaaatcattatggatatacactttaaaaattgaaccaacaaaaattggtgggacatacattgatttcatccaat 14795182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 15242264 - 15242174
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||||||| |||||||||||||| |  |||||||| ||||  ||| | ||| ||| |||||  | ||||||||||||||||||||    
T  15242264 tcactctcttattagtttaaatcattatggatatacactttaaaaattgaaccaacaaaaattggtgggacatacattgatttcatccaat 15242174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 198
Target Start/End: Original strand, 10934008 - 10934094
Alignment:
Q  112 tctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||| ||||||||||| ||   ||| |||||| ||| |||||||| |||||||||||| | ||| ||| |||| |||||||    
T  10934008 tctcttattagtttaaatcattgtgggtttatactttggaaatagaaaccatacaaagtggtgagacatatattaattttatccaat 10934094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 11692320 - 11692230
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||| ||||| ||||||||| | ||   ||||||||||||||  ||| | ||||||||||||   | ||||||||||||||||||||    
T  11692320 tcactctcatattagtttaaatcactgtgagtttacactttgaaaattgaacctacacaaagtggtaggacatacattgatttcatccaat 11692230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 27888423 - 27888333
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||||||  ||||||||||| ||    |||||||| ||||  ||| |||||||||||||||  | |||||||||||| |||||||    
T  27888423 tcactctcttattggtttaaatcattgtgggtctacactttaaaaattgaacccacacaaagtggtgggacatacattgattttatccaat 27888333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 32205217 - 32205127
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||||||| ||||||||||| |  || || ||||| ||||  ||| ||||||||| ||||   | ||||||||||||||||||||    
T  32205217 tcactctcttattagtttaaatcattgtagacctatactttaaaaattgaacccacacaaaatggtaggacatacattgatttcatccaat 32205127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 12271093 - 12271041
Alignment:
Q  141 tacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatc 194  Q
    ||||||||||||| |||| |||||||||||||||  | ||||||||||||||||    
T  12271093 tacactttgaaaatagaa-ccacacaaagtggtgggacatacattgatttcatc 12271041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 17354599 - 17354656
Alignment:
Q  141 tacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    ||||||||| ||| |||| ||||| |||||||||  | ||||||||||||||||||||    
T  17354599 tacactttggaaatagaacccacataaagtggtgggacatacattgatttcatccaat 17354656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 22190047 - 22189990
Alignment:
Q  141 tacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||||||  ||| |||||||||||||||    ||||||||||||||||||||    
T  22190047 tacactttgaaaattgaacccacacaaagtggtgggccatacattgatttcatccaat 22189990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 7775107 - 7775051
Alignment:
Q  142 acactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    ||||||||||||  |||  ||||||||||||||  | ||||||||||||||||||||    
T  7775107 acactttgaaaattgaactcacacaaagtggtgggacatacattgatttcatccaat 7775051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 27953 - 27863
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||||||  ||||||||||| ||    ||||||||| ||| |||| |||||||||||||||  | ||||||||||| ||||||||    
T  27953 tcactctcttattggtttaaatcattgtgggtctacactttggaaatagaacccacacaaagtggtgggacatacattgattccatccaat 27863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 1977212 - 1977301
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaa 197  Q
    ||||||| |||||  ||||||||||| || |  |||||||||||||  ||| ||||||||||||||   | |||||||||||||||||||    
T  1977212 tcactcttttattggtttaaatcattgtggatctacactttgaaaattgaacccacacaaagtggttggacatacattgatttcatccaa 1977301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 31301257 - 31301166
Alignment:
Q  106 attcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    ||||| |||||||||  ||||||| ||||||  || |||| ||||||| ||||  ||||||||||||||  | ||||||||||||||||||||    
T  31301257 attcattctcttattggtttaaattattatgatct-acacattgaaaatagaactcacacaaagtggtggaacatacattgatttcatccaat 31301166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 17499272 - 17499362
Alignment:
Q  108 tcactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||||||||  ||||||||||| || |  |||||||||||||  ||| | ||||||| |||||  | ||| ||||||||||||||||    
T  17499272 tcactctcttattggtttaaatcattgtggatctacactttgaaaattgaaccaacacaaaatggtgggacatatattgatttcatccaat 17499362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 8914911 - 8914822
Alignment:
Q  109 cactctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    ||||||||||||  ||||||||||| ||    |||||||||||||  ||| |||||||||||||||  | |||||||| ||| |||||||    
T  8914911 cactctcttattggtttaaatcattgtgggtctacactttgaaaaatgaacccacacaaagtggtgggacatacattggttttatccaat 8914822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 198
Target Start/End: Complemental strand, 35797531 - 35797446
Alignment:
Q  113 ctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||| |||||||||||| || | ||||||||| ||||  |||  | ||||||||||||  | |||||||||||| |||||||    
T  35797531 ctcttattgatttaaatcattgtggatttacactttaaaaattgaactcgcacaaagtggtggaacatacattgattttatccaat 35797446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 5979987 - 5979931
Alignment:
Q  142 acactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    ||||||||||||  ||| |||||||||||||||  | |||||||||| |||||||||    
T  5979987 acactttgaaaattgaacccacacaaagtggtgggacatacattgatctcatccaat 5979931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 8903991 - 8903907
Alignment:
Q  110 actctcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatc 194  Q
    |||||||||||  ||||||||||| ||    |||||||||||||  ||| | |||||||||||||  | ||||||||||||||||    
T  8903991 actctcttattggtttaaatcattgtgggtctacactttgaaaattgaaccgacacaaagtggtgggacatacattgatttcatc 8903907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 9952802 - 9952886
Alignment:
Q  114 tcttattaatttaaatcattatgtacttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    |||||||  ||||||||||| ||   ||||||||||||||  |||  ||||||||||||||  | || |||||||||||||||||    
T  9952802 tcttattggtttaaatcattgtgggtttacactttgaaaattgaactcacacaaagtggtgggacatgcattgatttcatccaat 9952886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 35689591 - 35689531
Alignment:
Q  138 acttacactttgaaaacagaaaccacacaaagtggtgatagatacattgatttcatccaat 198  Q
    ||||||||||||||||  |||  |||| |||||||||  | ||||||||||||||||||||    
T  35689591 acttacactttgaaaatggaactcacataaagtggtgggacatacattgatttcatccaat 35689531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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