View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19848_low_10 (Length: 444)
Name: NF19848_low_10
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19848_low_10 |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 15 - 426
Target Start/End: Complemental strand, 13716440 - 13716029
Alignment:
| Q |
15 |
catagggagggttcaacttgtcaactcggtggttattcgcatgctagtatactccttccatgtgtatgtctggcctatctctttgattaagcagcttaga |
114 |
Q |
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| T |
13716440 |
catagggagcgttcaacttgtcaactcggtaattattcgcatgctagtatactccttccatgtgtatgtctggcctatctctttgattaagcagcttaga |
13716341 |
T |
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| Q |
115 |
agaatgtttactaatttcatttggagcggagatacttcgacaaagaagatttgaattgtatctaggagcaatatttgcaggcccaaagttgagggtgggt |
214 |
Q |
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| T |
13716340 |
agaatgtttactaatttcatttggagcggagatacttcgacaaagaagatttgcattgtatctaggagcaatatttgcaggcccaaagttgagggtgggt |
13716241 |
T |
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| Q |
215 |
tagcactgcgagatcctttgattgttaataaaactgcaatgttgttcctttgttggaaactcatcacctctgatgagcagtgggctcttatgtgcagaaa |
314 |
Q |
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| T |
13716240 |
tagcactgcgagatcctttgattgttaataaaactgcaatgttgtttctttgttggaaactcatcacctctgatgagcagtgggctcttatgtgcagaaa |
13716141 |
T |
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| Q |
315 |
gagatttttcataacgagttctccgatcaaacatcatattgcttcttccatttggcttcggcttaagccttttgttcagcctgtgttgaataattctaat |
414 |
Q |
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|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13716140 |
tagttttttcataacgagttctccgatcaagcatcatattgcttcttccatttggcttcggcttaagccttttgttcagcctgtgttgaataattctaat |
13716041 |
T |
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| Q |
415 |
tggaacataggg |
426 |
Q |
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| T |
13716040 |
tggaacataggg |
13716029 |
T |
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Target: scaffold0118 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 95 - 389
Target Start/End: Complemental strand, 36634 - 36334
Alignment:
| Q |
95 |
ctttgattaagcagcttagaagaatgtttactaatttcatttggagcggagatacttcgacaaagaagatttgaattgtatctaggagcaatatttgcag |
194 |
Q |
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|||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| | ||| |||||||| ||||| | || ||||||| |||| | |
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| T |
36634 |
ctttcattaaacagcttagaagaatgtttactaattttatttggagcggagatacttcaataaaaaagatttgcattgtctgtacgagcaatctttgttg |
36535 |
T |
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| Q |
195 |
gcccaaagtt-------gagggtgggttagcactgcgagatcctttgattgttaataaaactgcaatgttgttcctttgttggaaactcatcacctctga |
287 |
Q |
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| T |
36534 |
gcccaaagctggggggggggggggggttagctctgcattaccctttgattgttgataaagtggcgatgttgtttcttggttggaaacttatcacttctga |
36435 |
T |
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| Q |
288 |
tgagcagtgggctcttatgtg-cagaaagagatttttcataacgagttctccgatcaaacatcatattgcttcttccatttggcttcggcttaagccttt |
386 |
Q |
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| T |
36434 |
tgagcag-aggctattatgtgtcag-aagagatttttacgatcgggttctccgatccaacatcatactacttattcgatttggcctcggcttaagtcttt |
36337 |
T |
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| Q |
387 |
tgt |
389 |
Q |
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||| |
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| T |
36336 |
tgt |
36334 |
T |
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