View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19848_low_11 (Length: 437)
Name: NF19848_low_11
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19848_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 14 - 420
Target Start/End: Original strand, 8767295 - 8767699
Alignment:
| Q |
14 |
caaaggaaaataaatcacttgaaactcnnnnnnngtcaataattaaaattttattgataatagtccaaactcaacatcaaagtgagcgaactctacccac |
113 |
Q |
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| T |
8767295 |
caaaggaaaataaatcacttgaaactcattttttgtcgataattaaaattttattgataatagtccaaactcagcatcaaagtgagctaactctatccac |
8767394 |
T |
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| Q |
114 |
cttttatgataatgtaatattcatccacatatatttatatcatttttgacgacattcaacgaacatgccacttgaccaaacaagtaagtaagtctttgaa |
213 |
Q |
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| T |
8767395 |
cttttatgataatgtaatattgatccacatacatttatatcacttttgacgacattcaacgaacatgccacttgaccaaacaagtaagtaagtc-ttgaa |
8767493 |
T |
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| Q |
214 |
aaatacatatttatttttccttatggaagagagatcaacttcaaatatgaaagaactgataatgtatcatggatcaattatgaaagtgattcaaaataga |
313 |
Q |
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| T |
8767494 |
aaatacatatttatttttccttgtggaagagaaatcaacttcaaatatgaaagaaatgataatgtatcatggatcaattatgaaagtgatccaaaataga |
8767593 |
T |
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| Q |
314 |
atttgcatgaatgtataatatatgatatatgatatgatgaagcattaaattgtaccaaataagttgtattacttacttatgatgaaaggtaaggttctga |
413 |
Q |
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| T |
8767594 |
atttgcatgaat-tataatatatgatatatgatatgatgaagaattaaattgtaccaaataagttgtattacttacttatgatgaaaggtaaggttctga |
8767692 |
T |
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| Q |
414 |
agccacc |
420 |
Q |
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| T |
8767693 |
agccacc |
8767699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 420
Target Start/End: Original strand, 8750789 - 8750859
Alignment:
| Q |
350 |
atgaagcattaaattgtaccaaataagttgtattacttacttatgatgaaaggtaaggttctgaagccacc |
420 |
Q |
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| T |
8750789 |
atgaagcagtaaattgtagtaaatgagttgagttacctacctatgatgaagggtaaggttctgaagccacc |
8750859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 11803860 - 11803930
Alignment:
| Q |
49 |
tcaataattaaaattttattgataatagtccaaactcaacatcaaagtgagcgaactctacccaccttttatga |
122 |
Q |
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| T |
11803860 |
tcaatagttaaaattttattaataaaggtccgaacccaacatcaaagtga---aactctacccaccttctatga |
11803930 |
T |
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