View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19848_low_12 (Length: 384)
Name: NF19848_low_12
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19848_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 42631763 - 42632131
Alignment:
| Q |
1 |
gtaagttcctctacggttcatgggtggataagatgtcataatagcaccttgtgcagcccataatagacctgctccgatgccgagaagggcaccggcaact |
100 |
Q |
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| T |
42631763 |
gtaagttcctttacggttcatgggtggataagatgtcataatagcaccttgtgcagcccataatagacctgctccgatgccgagaagggcaccggcaact |
42631862 |
T |
|
| Q |
101 |
atagcaaaagcttgatgttgtttatgattatagtaaaggaaagaaccagcgtagagtacataagttgaacaacctgcgaaaagagttaagtgaggtccga |
200 |
Q |
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| T |
42631863 |
atagcaaaagcttgatgttgtttatgattatagtaaaggaaagaaccagcgtagagtacataagttgaacaacctgcgaaaagagttaagtgaggtccga |
42631962 |
T |
|
| Q |
201 |
ggatgttgtagatgccaccacctagtataccaaacactgcaaaggttgtgtaaagtgcggttaaggcgttgttagaagctgttgcattgacttgaccacc |
300 |
Q |
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| T |
42631963 |
ggatgttgtagatgccaccacctaggataccaaacactgcaaaggttgtgtaaagtgcggttaaggcgttgttagaagctgttgcattgacttgaccacc |
42632062 |
T |
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| Q |
301 |
accacccattcctgaaagagcgttgaacatgcctggacaacaaaaacaaactaagccaataaggattat |
369 |
Q |
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| T |
42632063 |
accacccattcctgaaagagcgttgaacatgcctggacaacaaaaacaaactaagccaataaggattat |
42632131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 42638907 - 42639272
Alignment:
| Q |
1 |
gtaagttcctctacggttcatgggtggataagatgtcataatagcaccttgtgcagcccataatagacctgctccgatgccgagaagggcaccggcaact |
100 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||||||||||| |||| ||||||||| || |||||||||||||||| || |||| |||| |
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| T |
42638907 |
gtaagttcctttacgattcatgggtggataagatgtcataatagcaccttgggcagaccataatagtccagctccgatgccgagaacagcgccggaaact |
42639006 |
T |
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| Q |
101 |
atagcaaaagcttgatgttgtttatgattatagtaaaggaaagaaccagcgtagagtacataagttgaacaacctgcgaaaagagttaagtgaggtccga |
200 |
Q |
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| T |
42639007 |
acagcaaaagcttgatgttgtttatgattgtagtagaggaatgaaccggtgtaaaggacataggaggaacaacctgcgaaaagagttaagtggggtccga |
42639106 |
T |
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| Q |
201 |
ggatgttgtagatgccaccacctagtataccaaacactgcaaaggttgtgtaaagtgcggttaaggcgttgttagaagctgttgcattgacttgaccacc |
300 |
Q |
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| T |
42639107 |
ggatgttgtagatgccaccacctaggattccgaaaattgtgaagcttgtgtaaagtgcggttaaggcgttgttagaagctgttgcattgacttgaccacc |
42639206 |
T |
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| Q |
301 |
accacccattcctgaaagagcgttgaacatgcctggacaacaaaaacaaactaagccaataaggat |
366 |
Q |
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| T |
42639207 |
accacccattcctgaaagagcattgaacatgcctggacaacaaaaacaaaccaatccaataaggat |
42639272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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