View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19848_low_14 (Length: 371)
Name: NF19848_low_14
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19848_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 156 - 368
Target Start/End: Complemental strand, 34462472 - 34462260
Alignment:
| Q |
156 |
acacaccagctcttcaatatatattctttagttcatgatctattttttaaaaaattagtttacacgctcgattcatagattgaccactcatgtttatata |
255 |
Q |
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| T |
34462472 |
acacaccagctcttcaatatatattctttagttcatgatctaattttttaaaaattagtttacacgctcgattcatagattgatcactcatgtttatata |
34462373 |
T |
|
| Q |
256 |
annnnnnngttaataataaatgttagtacgttaaatgttatgttattannnnnnncattgtccgtacttgaaccttgaactttgactcctcaactccttt |
355 |
Q |
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| T |
34462372 |
atttttttgttaataacaaatgttagtacgttaaatgttatgttattatttttttcattgtccgtacttgaaccttgaactttgactcctcaactccttt |
34462273 |
T |
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| Q |
356 |
aatcacctatgct |
368 |
Q |
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||||||||||||| |
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| T |
34462272 |
aatcacctatgct |
34462260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 34462608 - 34462508
Alignment:
| Q |
19 |
gatcatttgctttctatttgcacttacacttaccttttccttgtttaatttgtgtcagtaaaattaagtaataatttagaagataaaaataataacaaca |
118 |
Q |
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| T |
34462608 |
gatcatttgctttctatttgcacttacacttaccttttccttgtttaatttgtgtcagtaaaattaagtaataatttagaagataaaaataataacaaca |
34462509 |
T |
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| Q |
119 |
a |
119 |
Q |
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| T |
34462508 |
a |
34462508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 8098188 - 8098224
Alignment:
| Q |
267 |
aataataaatgttagtacgttaaatgttatgttatta |
303 |
Q |
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| T |
8098188 |
aataataaatgttagtatgttaattgttatgttatta |
8098224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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