View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19848_low_18 (Length: 328)

Name: NF19848_low_18
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19848_low_18
NF19848_low_18
[»] chr4 (10 HSPs)
chr4 (181-313)||(26646282-26646414)
chr4 (196-313)||(13683438-13683555)
chr4 (196-313)||(22187897-22188014)
chr4 (208-309)||(33078057-33078158)
chr4 (228-313)||(26646620-26646705)
chr4 (82-148)||(26646156-26646221)
chr4 (196-257)||(13689806-13689867)
chr4 (82-143)||(13690053-13690114)
chr4 (87-142)||(24409203-24409258)
chr4 (279-313)||(13689765-13689799)
[»] chr8 (5 HSPs)
chr8 (196-313)||(36991690-36991807)
chr8 (196-257)||(36996850-36996911)
chr8 (208-257)||(34592496-34592545)
chr8 (196-239)||(37006690-37006733)
chr8 (271-313)||(36996913-36996955)
[»] chr7 (2 HSPs)
chr7 (82-143)||(8596337-8596398)
chr7 (279-313)||(8596620-8596654)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 181 - 313
Target Start/End: Original strand, 26646282 - 26646414
Alignment:
Q  181 aatttgaaagagagaaaagttcacctcaattttattcctgcatccattaaataaataattagaatatgatcagcctgaacagtctactgtatatcaagcc 280  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26646282 aatttgaaagagagtaaagttcacctcaattttattcctgcatccattaaataaataattagaatatgatcagcctgaacagtctactgtatatcaagcc 26646381  T
Q  281 aaaagcctagcaacactattgtatcacactttt 313  Q
    |||||||||||||||||| ||||||||||||||    
T  26646382 aaaagcctagcaacactaatgtatcacactttt 26646414  T

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Target: chr4; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 196 - 313
Target Start/End: Complemental strand, 13683555 - 13683438
Alignment:
Q  196 aaagttcacctcaattttattcctgcatccattaaataaataattagaatatgatcagcctgaacagtctactgtatatcaagccaaaagcctagcaaca 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  13683555 aaagttcacctcaattttattcctgcatccattaaataaataattagaatatgatcagcctgcacagtctactgggtatcaagccaaaagcctagcaaca 13683456  T
Q  296 ctattgtatcacactttt 313  Q
    ||||||||||||||||||    
T  13683455 ctattgtatcacactttt 13683438  T

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Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 196 - 313
Target Start/End: Original strand, 22187897 - 22188014
Alignment:
Q  196 aaagttcacctcaattttattcctgcatccattaaataaataattagaatatgatcagcctgaacagtctactgtatatcaagccaaaagcctagcaaca 295  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  22187897 aaagtttacctcaattttattcctgcatccattaaatagataattagaatatgatcagcctgcacagtctactggatatcaagccaaaagcctagcaaca 22187996  T
Q  296 ctattgtatcacactttt 313  Q
    ||||||||||||||||||    
T  22187997 ctattgtatcacactttt 22188014  T

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Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 208 - 309
Target Start/End: Complemental strand, 33078158 - 33078057
Alignment:
Q  208 aattttattcctgcatccattaaataaataattagaatatgatcagcctgaacagtctactgtatatcaagccaaaagcctagcaacactattgtatcac 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||| ||||||||||||||||||||||||||| |||||    
T  33078158 aattttattcctgcatccattaaataaataattagaatatgatcagcctgcacagtctactagataacaagccaaaagcctagcaacactattgcatcac 33078059  T
Q  308 ac 309  Q
    ||    
T  33078058 ac 33078057  T

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Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 228 - 313
Target Start/End: Original strand, 26646620 - 26646705
Alignment:
Q  228 taaataaataattagaatatgatcagcctgaacagtctactgtatatcaagccaaaagcctagcaacactattgtatcacactttt 313  Q
    |||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  26646620 taaataaataattagaatatgatcagcctgcacggtctactggatatcaagccaaaagcctaacaacactattgtatcacactttt 26646705  T

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Target: chr4; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 26646156 - 26646221
Alignment:
Q  82 cttttccccttgcatatcttcggtggattgtcaaatacaggcaagtccacaattcgaccgctatata 148  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26646156 cttttccccttgcatatcttcggtggattgtcaaatacagg-aagtccacaattcgaccgctatata 26646221  T

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Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 13689867 - 13689806
Alignment:
Q  196 aaagttcacctcaattttattcctgcatccattaaataaataattagaatatgatcagcctg 257  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13689867 aaagttcaccttaattttattcctgcatccattaaataaataattagaatatgatcagcctg 13689806  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 13690114 - 13690053
Alignment:
Q  82 cttttccccttgcatatcttcggtggattgtcaaatacaggcaagtccacaattcgaccgct 143  Q
    ||||||||||| ||||||||| |||||| ||||||||||| ||| |||||||||||||||||    
T  13690114 cttttccccttacatatcttctgtggatcgtcaaatacagtcaaatccacaattcgaccgct 13690053  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 24409203 - 24409258
Alignment:
Q  87 ccccttgcatatcttcggtggattgtcaaatacaggcaagtccacaattcgaccgc 142  Q
    |||||| ||||||||| |||||||||||||||||| ||||||||||||| ||||||    
T  24409203 ccccttacatatcttcagtggattgtcaaatacagtcaagtccacaatttgaccgc 24409258  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 13689799 - 13689765
Alignment:
Q  279 ccaaaagcctagcaacactattgtatcacactttt 313  Q
    |||||||||||||||||||||||||||||||||||    
T  13689799 ccaaaagcctagcaacactattgtatcacactttt 13689765  T

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Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 196 - 313
Target Start/End: Original strand, 36991690 - 36991807
Alignment:
Q  196 aaagttcacctcaattttattcctgcatccattaaataaataattagaatatgatcagcctgaacagtctactgtatatcaagccaaaagcctagcaaca 295  Q
    ||||||||| | |||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  36991690 aaagttcactttaattttttgcctgcatccattaaataaataattagaatatgatcagcctgcacagtctactggatatcaagccaaaagcctagcaaca 36991789  T
Q  296 ctattgtatcacactttt 313  Q
    || ||| |||||||||||    
T  36991790 ctgttgcatcacactttt 36991807  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 36996850 - 36996911
Alignment:
Q  196 aaagttcacctcaattttattcctgcatccattaaataaataattagaatatgatcagcctg 257  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36996850 aaagtttacctcaattttattcctgcatccattaaataaataattagaatatgatcagcctg 36996911  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 34592545 - 34592496
Alignment:
Q  208 aattttattcctgcatccattaaataaataattagaatatgatcagcctg 257  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34592545 aattttatgcctgcatccattaaataaataattagaatatgatcagcctg 34592496  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 37006690 - 37006733
Alignment:
Q  196 aaagttcacctcaattttattcctgcatccattaaataaataat 239  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  37006690 aaagtttacctcaattttattcctgcatccattaaataaataat 37006733  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 36996913 - 36996955
Alignment:
Q  271 atatcaagccaaaagcctagcaacactattgtatcacactttt 313  Q
    ||||||||| ||||||||| | |||||||||||||||||||||    
T  36996913 atatcaagcaaaaagcctaccgacactattgtatcacactttt 36996955  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 8596337 - 8596398
Alignment:
Q  82 cttttccccttgcatatcttcggtggattgtcaaatacaggcaagtccacaattcgaccgct 143  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  8596337 cttttccccttacatatcttcggtggattgtcaaatacagtcaagtccacaattcaaccgct 8596398  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 8596620 - 8596654
Alignment:
Q  279 ccaaaagcctagcaacactattgtatcacactttt 313  Q
    ||||||||||||||||||| |||||||||||||||    
T  8596620 ccaaaagcctagcaacactgttgtatcacactttt 8596654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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