View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19848_low_2 (Length: 541)
Name: NF19848_low_2
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19848_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 219 - 504
Target Start/End: Complemental strand, 35925806 - 35925521
Alignment:
| Q |
219 |
cttatagatgacagaaaaatgcattcaatttttaagaaatcaacttaaaattaaagaaaagaaaacaatcatgtcttttaaaatatcatttcccgaacct |
318 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||| || ||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35925806 |
cttatagatgacagaaaaatgcattcaatatctaagaaatcaacttataagaaaagaaaagcaaacaatcatgtcttttggaatatcatttcccgaacct |
35925707 |
T |
|
| Q |
319 |
aaaccgaaaaaatatcaacaacttttcggttttactgaatattagatggagacttcatgtcctgatcatttgcagtactagttgttgttgtgggatttat |
418 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35925706 |
aaaccgaaaaaatatcaagaacttttcggttttactgaaaattagatggagacttcatgtcctgatcatttaatgtactagttgttgttgtgggatttat |
35925607 |
T |
|
| Q |
419 |
gtttccatctgcagctggtgaaaggtgactcgactgtcctacttctttgacaatctctttggaatctgaattactatttcgagcag |
504 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
35925606 |
gtttccatctgcagccggtaaaaggtgactcgattgtcttacttctttgacaatctcttcggaatctgaattaccatttcgagcag |
35925521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 97 - 216
Target Start/End: Complemental strand, 35925985 - 35925869
Alignment:
| Q |
97 |
attacagaactataaatattgtaagaaaagccacaagatttt-cattgacaatatcttaatgttacaagtttcacaatccactttcatcaacatcagaac |
195 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||||||||||| |||||||||||||| ||||||| ||||||| ||||||| ||| || |||||||| |
|
|
| T |
35925985 |
attacagaactatatatattgtgagaaaggccacaagatttttcattgacaatatctcaatgttataagtttctcaatcca----cattaatatcagaac |
35925890 |
T |
|
| Q |
196 |
tatttagaactgaaatatcat |
216 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
35925889 |
tatttagaactgaaatatcat |
35925869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 438
Target Start/End: Original strand, 35556048 - 35556123
Alignment:
| Q |
366 |
ggagacttcatgtcctgatcatttgcagtacta---gttgttgttgtgggatttatgtttccatctgcagctggtg |
438 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||| ||| ||||||||||||||||| ||||||| |||| |
|
|
| T |
35556048 |
ggagacttcatgtcctgatcattcgcagtactagtggttgtcgttttgggatttatgtttccacctgcagccggtg |
35556123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 366 - 433
Target Start/End: Original strand, 35544816 - 35544886
Alignment:
| Q |
366 |
ggagacttcatgtcctgatcatttgcagtactagttg---ttgttgtgggatttatgtttccatctgcagc |
433 |
Q |
| |
|
|||||||| |||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35544816 |
ggagactttttgtcctgatcatttgcagcacgagttgttgttgttgtgggatttatgtttccatctgcagc |
35544886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 431
Target Start/End: Complemental strand, 34990694 - 34990641
Alignment:
| Q |
378 |
tcctgatcatttgcagtactagttgttgttgtgggatttatgtttccatctgca |
431 |
Q |
| |
|
|||||||||||||| | || |||||||| ||||||||||||||||||||||||| |
|
|
| T |
34990694 |
tcctgatcatttgctgcaccagttgttgatgtgggatttatgtttccatctgca |
34990641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 405
Target Start/End: Complemental strand, 35919930 - 35919891
Alignment:
| Q |
366 |
ggagacttcatgtcctgatcatttgcagtactagttgttg |
405 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
35919930 |
ggagacttcatgtcctgattatttgccgtactagttgttg |
35919891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 427
Target Start/End: Original strand, 35527669 - 35527723
Alignment:
| Q |
376 |
tgtcctgatcatttgcagtac---tagttgttgttgtgggatttatgtttccatc |
427 |
Q |
| |
|
|||||||||||||||||| || | ||||||||||||||||||| ||||||||| |
|
|
| T |
35527669 |
tgtcctgatcatttgcagcaccagttgttgttgttgtgggatttaagtttccatc |
35527723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 512
Target Start/End: Original strand, 35556208 - 35556240
Alignment:
| Q |
480 |
gaatctgaattactatttcgagcagcagcagca |
512 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
35556208 |
gaatcagaattactatttcgagcagcagcagca |
35556240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 406
Target Start/End: Complemental strand, 35891482 - 35891442
Alignment:
| Q |
366 |
ggagacttcatgtcctgatcatttgcagtactagttgttgt |
406 |
Q |
| |
|
|||||||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
35891482 |
ggagacttcaagtcctcatgatttgcagtactagttgttgt |
35891442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University