View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19848_low_20 (Length: 301)
Name: NF19848_low_20
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19848_low_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 29606918 - 29607230
Alignment:
| Q |
1 |
accagcacctacacacaaaaagaagaaagcaccaaaatcatcacctgttccttccccagcaattctcccaccatcacctgcaccaacacctgcaatagac |
100 |
Q |
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| T |
29606918 |
accagcacctacacacaaaaagaagaaagcaccaaaatcatcacctgttccttccccagcaattctcccaccatcacctgcaccaacacctgcaatagac |
29607017 |
T |
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| Q |
101 |
acacc------------agcaccatcgcctgaagatgatgcgccagaaccaccgccaccccacaagcacaagagaagaaaacacaagcatagtaagcata |
188 |
Q |
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| T |
29607018 |
acaccatcatcagcaccagcaccatcgcctgaagatgatgcgccagaaccaccgccaccccacaagcacaagagaagaaaacacaagcatagtaagcata |
29607117 |
T |
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| Q |
189 |
agaaacatcacgcactagctctagcaccagagcctacaagttcaagttcaacaatcattaggaggagtcccccagcaccactggctgatgataatactac |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29607118 |
agaaacatcacgcactagctctagcaccagagcctacaagttcaagttcaacaatcattaggaggagtcccccagcaccactggctgatgataatactac |
29607217 |
T |
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| Q |
289 |
aatgagttcagat |
301 |
Q |
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||||||||||||| |
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| T |
29607218 |
aatgagttcagat |
29607230 |
T |
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