View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19848_low_23 (Length: 288)

Name: NF19848_low_23
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19848_low_23
NF19848_low_23
[»] chr5 (41 HSPs)
chr5 (1-222)||(14625921-14626146)
chr5 (4-58)||(119046-119100)
chr5 (2-56)||(119218-119272)
chr5 (4-125)||(30351634-30351758)
chr5 (12-84)||(3191841-3191913)
chr5 (12-59)||(3192230-3192277)
chr5 (2-51)||(3406692-3406741)
chr5 (2-58)||(19352505-19352561)
chr5 (2-58)||(19353069-19353125)
chr5 (11-58)||(119958-120005)
chr5 (12-83)||(5747167-5747238)
chr5 (12-83)||(21949443-21949514)
chr5 (12-83)||(28641567-28641638)
chr5 (12-83)||(31162464-31162535)
chr5 (2-56)||(119786-119840)
chr5 (12-58)||(6543458-6543504)
chr5 (12-58)||(21949831-21949877)
chr5 (12-58)||(31162852-31162898)
chr5 (12-58)||(39402255-39402301)
chr5 (12-58)||(39402645-39402691)
chr5 (3-88)||(4187806-4187891)
chr5 (11-84)||(19352342-19352415)
chr5 (10-59)||(31093426-31093475)
chr5 (14-58)||(3878818-3878862)
chr5 (14-58)||(31093041-31093085)
chr5 (11-58)||(19353238-19353285)
chr5 (12-58)||(718224-718270)
chr5 (12-58)||(6543846-6543892)
chr5 (13-75)||(14625166-14625228)
chr5 (12-58)||(28641204-28641250)
chr5 (1-58)||(4186787-4186844)
chr5 (12-58)||(5746804-5746850)
chr5 (4-58)||(30350637-30350691)
chr5 (14-50)||(8647358-8647394)
chr5 (12-59)||(3879203-3879250)
chr5 (12-47)||(18340661-18340696)
chr5 (12-70)||(87249-87307)
chr5 (12-70)||(8648053-8648111)
chr5 (10-51)||(35373682-35373723)
chr5 (12-89)||(37813419-37813496)
chr5 (12-84)||(31588320-31588392)
[»] scaffold0148 (2 HSPs)
scaffold0148 (12-88)||(32964-33040)
scaffold0148 (12-88)||(29318-29394)
[»] chr3 (46 HSPs)
chr3 (12-88)||(20831071-20831147)
chr3 (12-88)||(20826772-20826848)
chr3 (11-83)||(35300787-35300859)
chr3 (12-84)||(4199496-4199568)
chr3 (12-83)||(42606323-42606394)
chr3 (12-83)||(45539615-45539686)
chr3 (14-58)||(22406888-22406932)
chr3 (14-58)||(34950187-34950231)
chr3 (12-83)||(2388675-2388746)
chr3 (12-59)||(36899297-36899344)
chr3 (12-83)||(46689725-46689796)
chr3 (4-58)||(7248489-7248543)
chr3 (11-110)||(33225531-33225634)
chr3 (12-58)||(45539252-45539298)
chr3 (3-57)||(48868588-48868642)
chr3 (10-59)||(22407273-22407322)
chr3 (14-58)||(27475729-27475773)
chr3 (12-59)||(34949799-34949846)
chr3 (2-57)||(54588491-54588546)
chr3 (12-58)||(2389063-2389109)
chr3 (12-58)||(4199886-4199932)
chr3 (9-51)||(25770535-25770577)
chr3 (12-58)||(36899685-36899731)
chr3 (12-58)||(42606711-42606757)
chr3 (12-58)||(46690113-46690159)
chr3 (3-57)||(48867685-48867739)
chr3 (5-59)||(51587566-51587620)
chr3 (12-54)||(27475433-27475475)
chr3 (12-70)||(44504374-44504432)
chr3 (2-47)||(131948-131993)
chr3 (2-51)||(26741138-26741187)
chr3 (11-88)||(35301863-35301940)
chr3 (2-47)||(44504299-44504344)
chr3 (2-51)||(50732388-50732437)
chr3 (2-51)||(50780418-50780467)
chr3 (12-48)||(132069-132105)
chr3 (11-57)||(3799765-3799811)
chr3 (11-57)||(47343726-47343772)
chr3 (12-57)||(9217864-9217909)
chr3 (2-51)||(9218348-9218397)
chr3 (12-57)||(22814340-22814385)
chr3 (17-70)||(34743458-34743511)
chr3 (2-51)||(37172288-37172337)
chr3 (12-57)||(51755915-51755960)
chr3 (4-48)||(50732261-50732305)
chr3 (4-48)||(50780550-50780594)
[»] chr4 (53 HSPs)
chr4 (12-88)||(47053805-47053881)
chr4 (12-88)||(47058477-47058553)
chr4 (12-84)||(28505252-28505324)
chr4 (12-67)||(12108280-12108335)
chr4 (12-83)||(40841505-40841576)
chr4 (3-86)||(49426324-49426407)
chr4 (12-58)||(21235071-21235117)
chr4 (2-51)||(29691746-29691795)
chr4 (14-58)||(1317106-1317150)
chr4 (12-80)||(2669416-2669484)
chr4 (11-125)||(7164919-7165037)
chr4 (2-50)||(10580074-10580122)
chr4 (14-58)||(12923073-12923117)
chr4 (14-58)||(30545759-30545803)
chr4 (14-58)||(43979603-43979647)
chr4 (14-58)||(46263066-46263110)
chr4 (12-59)||(12922685-12922732)
chr4 (12-83)||(28957717-28957788)
chr4 (12-83)||(38026082-38026153)
chr4 (12-58)||(2669050-2669096)
chr4 (3-57)||(17287522-17287576)
chr4 (3-57)||(17288374-17288428)
chr4 (12-58)||(40841893-40841939)
chr4 (12-58)||(54167538-54167584)
chr4 (10-59)||(789936-789985)
chr4 (12-57)||(55347970-55348015)
chr4 (14-58)||(790326-790370)
chr4 (1-57)||(54142358-54142414)
chr4 (12-83)||(31228285-31228356)
chr4 (12-59)||(43979988-43980035)
chr4 (1-88)||(54143471-54143558)
chr4 (2-44)||(1791389-1791431)
chr4 (12-58)||(21235461-21235507)
chr4 (12-58)||(28957354-28957400)
chr4 (12-58)||(31227922-31227968)
chr4 (3-57)||(49424489-49424543)
chr4 (12-58)||(55347604-55347650)
chr4 (2-51)||(5545018-5545067)
chr4 (3-48)||(26168200-26168245)
chr4 (1-49)||(7118002-7118050)
chr4 (10-56)||(1317494-1317540)
chr4 (12-58)||(38025719-38025765)
chr4 (10-59)||(46262676-46262725)
chr4 (14-58)||(28505641-28505685)
chr4 (2-58)||(54168823-54168879)
chr4 (12-83)||(3296919-3296990)
chr4 (12-59)||(30546145-30546192)
chr4 (1-44)||(35166708-35166751)
chr4 (2-44)||(3296751-3296793)
chr4 (12-70)||(29691569-29691627)
chr4 (12-70)||(34129288-34129346)
chr4 (21-57)||(12107758-12107794)
chr4 (19-51)||(35468887-35468919)
[»] chr2 (47 HSPs)
chr2 (12-88)||(44930027-44930103)
chr2 (12-88)||(44934653-44934729)
chr2 (2-84)||(18107399-18107481)
chr2 (12-58)||(10709519-10709565)
chr2 (11-80)||(10708066-10708135)
chr2 (14-58)||(3854112-3854156)
chr2 (14-58)||(22701558-22701602)
chr2 (12-84)||(39096931-39097003)
chr2 (2-58)||(39947086-39947142)
chr2 (12-83)||(1804638-1804709)
chr2 (12-83)||(6476130-6476201)
chr2 (12-83)||(11451162-11451233)
chr2 (12-83)||(27377692-27377763)
chr2 (12-59)||(39096567-39096614)
chr2 (12-58)||(1804275-1804321)
chr2 (12-58)||(6476518-6476564)
chr2 (12-124)||(18105760-18105875)
chr2 (3-88)||(23222833-23222918)
chr2 (2-51)||(24093363-24093412)
chr2 (2-51)||(32861047-32861096)
chr2 (14-58)||(12089740-12089784)
chr2 (2-58)||(39945876-39945932)
chr2 (12-59)||(3854497-3854544)
chr2 (12-59)||(12090125-12090172)
chr2 (12-59)||(34037852-34037899)
chr2 (5-67)||(2036594-2036656)
chr2 (4-58)||(10711002-10711056)
chr2 (1-58)||(23221867-23221924)
chr2 (5-57)||(2035645-2035697)
chr2 (2-58)||(10710830-10710886)
chr2 (14-58)||(26525507-26525551)
chr2 (12-59)||(26525894-26525941)
chr2 (12-70)||(2191261-2191319)
chr2 (12-58)||(11450799-11450845)
chr2 (21-59)||(22701944-22701982)
chr2 (12-58)||(27378080-27378126)
chr2 (141-222)||(18105903-18105984)
chr2 (2-46)||(3624925-3624969)
chr2 (12-70)||(2517457-2517515)
chr2 (12-46)||(21182351-21182385)
chr2 (20-58)||(34038252-34038290)
chr2 (12-57)||(21216967-21217012)
chr2 (12-57)||(21217322-21217367)
chr2 (12-57)||(21265035-21265080)
chr2 (12-57)||(21265390-21265435)
chr2 (4-57)||(32860850-32860903)
chr2 (12-48)||(24093200-24093236)
[»] chr8 (34 HSPs)
chr8 (1-124)||(36155304-36155430)
chr8 (12-80)||(29917516-29917584)
chr8 (2-59)||(4624567-4624624)
chr8 (4-51)||(21005956-21006003)
chr8 (12-59)||(29917148-29917195)
chr8 (11-84)||(4624403-4624476)
chr8 (2-51)||(44024432-44024481)
chr8 (14-58)||(12734604-12734648)
chr8 (12-67)||(26720365-26720420)
chr8 (12-58)||(24846006-24846052)
chr8 (4-46)||(45369134-45369176)
chr8 (2-47)||(11089133-11089178)
chr8 (1-58)||(16682564-16682621)
chr8 (2-70)||(6297850-6297918)
chr8 (1-57)||(36156359-36156415)
chr8 (12-59)||(12734216-12734263)
chr8 (12-70)||(6298023-6298081)
chr8 (9-51)||(10047692-10047734)
chr8 (1-47)||(20682741-20682787)
chr8 (11-56)||(4694434-4694479)
chr8 (2-51)||(6297669-6297718)
chr8 (5-70)||(13315239-13315304)
chr8 (5-58)||(20682924-20682977)
chr8 (21-121)||(34614070-34614171)
chr8 (11-125)||(40304727-40304845)
chr8 (12-68)||(12489517-12489572)
chr8 (4-84)||(21006096-21006176)
chr8 (12-88)||(44148621-44148697)
chr8 (12-70)||(6297506-6297564)
chr8 (12-70)||(17914241-17914299)
chr8 (95-124)||(6761444-6761473)
chr8 (12-57)||(9800344-9800389)
chr8 (12-57)||(22601542-22601587)
chr8 (12-68)||(16662212-16662268)
[»] chr7 (28 HSPs)
chr7 (12-84)||(18443219-18443291)
chr7 (14-58)||(884728-884772)
chr7 (14-58)||(1244057-1244101)
chr7 (14-58)||(28898460-28898504)
chr7 (14-58)||(41298290-41298334)
chr7 (12-83)||(33847909-33847980)
chr7 (2-51)||(20544145-20544194)
chr7 (12-59)||(1244442-1244489)
chr7 (16-124)||(27310095-27310207)
chr7 (4-59)||(27311047-27311102)
chr7 (12-59)||(28898072-28898119)
chr7 (12-67)||(29784370-29784425)
chr7 (12-59)||(41298675-41298722)
chr7 (2-48)||(10466649-10466695)
chr7 (12-58)||(18443609-18443655)
chr7 (12-58)||(22954089-22954135)
chr7 (12-58)||(33848297-33848343)
chr7 (12-59)||(29783978-29784025)
chr7 (12-58)||(30939564-30939610)
chr7 (2-46)||(49053719-49053763)
chr7 (11-54)||(11974894-11974937)
chr7 (12-47)||(20544321-20544356)
chr7 (4-59)||(30938631-30938686)
chr7 (9-47)||(28838566-28838604)
chr7 (5-58)||(4152757-4152810)
chr7 (4-57)||(11974700-11974753)
chr7 (12-57)||(17075618-17075663)
chr7 (5-57)||(28852730-28852782)
[»] chr6 (23 HSPs)
chr6 (12-83)||(14257190-14257261)
chr6 (3-51)||(14712865-14712913)
chr6 (14-58)||(33106975-33107019)
chr6 (12-83)||(20824207-20824278)
chr6 (12-58)||(6162288-6162334)
chr6 (12-58)||(14257578-14257624)
chr6 (12-84)||(20228209-20228281)
chr6 (12-84)||(22122193-22122265)
chr6 (12-59)||(6162687-6162734)
chr6 (12-83)||(15147761-15147832)
chr6 (12-59)||(33107360-33107407)
chr6 (12-58)||(15148149-15148195)
chr6 (12-58)||(20824595-20824641)
chr6 (12-57)||(8710341-8710386)
chr6 (12-57)||(20522157-20522202)
chr6 (5-57)||(19595650-19595702)
chr6 (12-59)||(34984544-34984590)
chr6 (5-67)||(19579193-19579255)
chr6 (12-57)||(5974055-5974100)
chr6 (12-84)||(7645956-7646028)
chr6 (11-51)||(8709601-8709641)
chr6 (12-58)||(20521229-20521275)
chr6 (12-48)||(4510232-4510268)
[»] chr1 (37 HSPs)
chr1 (12-124)||(1500911-1501027)
chr1 (12-59)||(9122728-9122775)
chr1 (12-83)||(47410829-47410900)
chr1 (2-51)||(3591171-3591220)
chr1 (14-58)||(30427719-30427763)
chr1 (14-58)||(45230175-45230219)
chr1 (12-83)||(40124119-40124190)
chr1 (12-83)||(46802365-46802436)
chr1 (12-58)||(8997384-8997430)
chr1 (12-58)||(32266526-32266572)
chr1 (12-58)||(47410466-47410512)
chr1 (14-58)||(17968468-17968512)
chr1 (10-58)||(46802753-46802801)
chr1 (12-59)||(17968080-17968127)
chr1 (12-58)||(9123116-9123162)
chr1 (12-58)||(32266914-32266960)
chr1 (12-58)||(40124507-40124553)
chr1 (4-49)||(12869663-12869708)
chr1 (2-51)||(19895607-19895656)
chr1 (4-56)||(12868469-12868521)
chr1 (2-58)||(36793574-36793630)
chr1 (4-52)||(45665947-45665995)
chr1 (12-59)||(30428104-30428151)
chr1 (10-57)||(37717797-37717844)
chr1 (12-59)||(45230560-45230607)
chr1 (5-58)||(1500096-1500149)
chr1 (12-88)||(45664731-45664807)
chr1 (9-47)||(5683375-5683413)
chr1 (4-70)||(6751341-6751407)
chr1 (4-70)||(18179915-18179981)
chr1 (15-53)||(31889481-31889519)
chr1 (12-70)||(50359427-50359485)
chr1 (12-57)||(5172789-5172834)
chr1 (4-57)||(5683197-5683250)
chr1 (2-47)||(18180086-18180131)
chr1 (2-35)||(50359290-50359323)
chr1 (12-48)||(48155017-48155053)
[»] scaffold0085 (2 HSPs)
scaffold0085 (12-83)||(39827-39898)
scaffold0085 (12-58)||(39464-39510)
[»] scaffold0009 (2 HSPs)
scaffold0009 (9-47)||(107936-107974)
scaffold0009 (12-80)||(107766-107834)


Alignment Details
Target: chr5 (Bit Score: 151; Significance: 6e-80; HSPs: 41)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 14626146 - 14625921
Alignment:
Q  1 cgactttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtc---ttctgtcca 97  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||    
T  14626146 cgactttaaaaaatagtccctacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtctgtttctgtcca 14626047  T
Q  98 gtcaccaaacagaatggtgatgtggcaa-nnnnnnnnnnnnnnnaaatggattgggtcaaacaaaataggtaaaataagacccgatccatagattcaacc 196  Q
    ||||||||||||||||||||||||||||                ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14626046 gtcaccaaacagaatggtgatgtggcaatttttttctactttttaaatggattgggtcaaacaaaatgggtaaaataagacccgatccatagattcaacc 14625947  T
Q  197 catttcatagtgattccaatccctaa 222  Q
    ||||||||||||||||||||||||||    
T  14625946 catttcatagtgattccaatccctaa 14625921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 119046 - 119100
Alignment:
Q  4 ctttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  119046 ctttaataaatagtccttacatttcaataaatgtttttaaaatccctacattttt 119100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 119218 - 119272
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattt 56  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  119218 gactttaaagaatagtccttacatttcaataaatgtttttaaaatccctacattt 119272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 30351758 - 30351634
Alignment:
Q  4 ctttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgt---cttctgtccagtc 100  Q
    ||||||| |||||||| ||||||||||||||| |||||||||| |||||||||||  | ||||| ||||||| |||||||| ||    || |   |||||    
T  30351758 ctttaaagaatagtccctacatttcaataaatatttttaaaattcctacatttttattttgttagcataaatagtccctgctgttaaattatactcagtc 30351659  T
Q  101 accaaacagaatggtgatgtggcaa 125  Q
    |||||||||||||||||||||||||    
T  30351658 accaaacagaatggtgatgtggcaa 30351634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 3191841 - 3191913
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgc 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  || |||| | ||||| ||||||||    
T  3191841 aatagtccttacatttcaataaatgtttttaaaatccctacatttttcctccgttagcgtaaatagtccctgc 3191913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 3192277 - 3192230
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3192277 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 3192230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 3406741 - 3406692
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatcccta 51  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3406741 gacttttaaaaatagtccttacatttcaataaatgtttttaaaatcccta 3406692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 19352505 - 19352561
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||| || |||||||||| ||||||||||||||||||||||||||||||||||||    
T  19352505 gactttgaagaatagtccttgcatttcaataaatgtttttaaaatccctacattttt 19352561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 19353125 - 19353069
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||| || ||||||||| |||||||||||||||||||||||||||||||||||||    
T  19353125 gactttgaagaatagtcctcacatttcaataaatgtttttaaaatccctacattttt 19353069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 120005 - 119958
Alignment:
Q  11 aaatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  120005 aaatagtccttacatttcaataaatgtttttaaaatccttacattttt 119958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 5747238 - 5747167
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||  || |||| | ||||| |||||||    
T  5747238 aatagtccctacatttcaataaatgtttttaaaatccctacatttttcctccgttagcgtaaatagtccctg 5747167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 21949443 - 21949514
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||  || |||| | ||||| |||||||    
T  21949443 aatagtccctacatttcaataaatgtttttaaaatccctacatttttcctccgttagcgtaaatagtccctg 21949514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 28641638 - 28641567
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||  || |||| | ||||| |||||||    
T  28641638 aatagtccctacatttcaataaatgtttttaaaatccctacatttttcctccgttagcgtaaatagtccctg 28641567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 31162464 - 31162535
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||  || |||| | ||||| |||||||    
T  31162464 aatagtccctacatttcaataaatgtttttaaaatccctacatttttcctccgttagcgtaaatagtccctg 31162535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 119840 - 119786
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattt 56  Q
    |||||| || |||||||||| ||||||||||||||||||||||||||||||||||    
T  119840 gactttgaagaatagtccttgcatttcaataaatgtttttaaaatccctacattt 119786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 6543458 - 6543504
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  6543458 aatagtccctacatttcaataaatgtttttaaaatccctacattttt 6543504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 21949877 - 21949831
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  21949877 aatagtccctacatttcaataaatgtttttaaaatccctacattttt 21949831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 31162898 - 31162852
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  31162898 aataatccttacatttcaataaatgtttttaaaatccctacattttt 31162852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 39402255 - 39402301
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  39402255 aatagtccctacatttcaataaatgtttttaaaatccctacattttt 39402301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 39402691 - 39402645
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  39402691 aatagtccttacatttcaataaatatttttaaaatccctacattttt 39402645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 4187891 - 4187806
Alignment:
Q  3 actttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtc 88  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||  ||||||| | || ||||  | || ||||||||||||||    
T  4187891 actttaaataatagtccttacatttcaataaatatttttaaaatcctcacattttctttccgttactacaattggtccctgccgtc 4187806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 19352342 - 19352415
Alignment:
Q  11 aaatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgc 84  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||  || |||| || |||| ||||||||    
T  19352342 aaatagtccttacatttcaataaatgtttttaaaattcttacatttttcctccgttagcacaaatagtccctgc 19352415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 31093475 - 31093426
Alignment:
Q  10 aaaatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  31093475 aaaatagtccctacatttcaatgaatgtttttaaaatccctacatttttt 31093426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 3878818 - 3878862
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  3878818 tagtccttacatttcaataaatgtttttaaaatccctatattttt 3878862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 31093041 - 31093085
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  31093041 tagtccttacatttcaatagatgtttttaaaatccctacattttt 31093085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 19353285 - 19353238
Alignment:
Q  11 aaatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||    
T  19353285 aaatagtccttacatttcaataaacgtttttaaaatccatacattttt 19353238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 718270 - 718224
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||    
T  718270 aatagttcttacatttcaataaatgtttttaaaatccctgcattttt 718224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 6543892 - 6543846
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  6543892 aataatccctacatttcaataaatgtttttaaaatccctacattttt 6543846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 14625166 - 14625228
Alignment:
Q  13 atagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaat 75  Q
    ||||||| || |||| ||||||||||||||||||||||||||||||  || ||||||||||||    
T  14625166 atagtccataaattttaataaatgtttttaaaatccctacatttttcctccgttatcataaat 14625228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 28641204 - 28641250
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  28641204 aataatccctacatttcaataaatgtttttaaaatccctacattttt 28641250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 4186787 - 4186844
Alignment:
Q  1 cgactttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    ||||||| || |||||| | ||||||||||||||||||||||| ||||||||||||||    
T  4186787 cgactttgaagaatagtacctacatttcaataaatgtttttaatatccctacattttt 4186844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 5746804 - 5746850
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||||    
T  5746804 aataatccctacatttcaataaatgttttaaaaatccctacattttt 5746850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 30350637 - 30350691
Alignment:
Q  4 ctttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| ||||||| ||||||||||||||| |||||||||| |||| ||||||    
T  30350637 ctttaaaatatagtccctacatttcaataaatatttttaaaattcctatattttt 30350691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 8647394 - 8647358
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccct 50  Q
    |||||||| ||||||||||||||||||||||||||||    
T  8647394 tagtccttgcatttcaataaatgtttttaaaatccct 8647358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 3879250 - 3879203
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||| ||| ||||||||||| ||||||||||||||||||| |||||||    
T  3879250 aataatccctacatttcaatgaatgtttttaaaatccctatatttttt 3879203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 18340696 - 18340661
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatc 47  Q
    |||||||||||||||||| |||||||||||||||||    
T  18340696 aatagtccttacatttcattaaatgtttttaaaatc 18340661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 87307 - 87249
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatca 70  Q
    |||||||| ||||||||| ||||||||||||||||||  ||||||| | || |||||||    
T  87307 aatagtccctacatttcattaaatgtttttaaaatcctcacattttatctccgttatca 87249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 8648111 - 8648053
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatca 70  Q
    ||||||| |||||||||| ||||| ||||||||||||  ||||||||| || |||||||    
T  8648111 aatagtctttacatttcattaaatatttttaaaatcctcacattttttctccgttatca 8648053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 35373723 - 35373682
Alignment:
Q  10 aaaatagtccttacatttcaataaatgtttttaaaatcccta 51  Q
    |||||||| ||| ||||||||||||| |||||||||||||||    
T  35373723 aaaatagttctttcatttcaataaatatttttaaaatcccta 35373682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 37813419 - 37813496
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtct 89  Q
    |||||||| ||||||||| ||| |||||||||||| |||| ||||||   | |||| || || |||||||||||||||    
T  37813419 aatagtccatacatttcattaagtgtttttaaaattcctaaatttttccaccgttaacaaaattggtccctgccgtct 37813496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 31588392 - 31588320
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgc 84  Q
    |||||||| ||||||||| ||||| ||||||||||||  ||||||| | || ||||||| || | ||||||||    
T  31588392 aatagtccctacatttcattaaatatttttaaaatcctaacattttatctccgttatcaaaattagtccctgc 31588320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 33040 - 32964
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtc 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||| ||||||||||||    
T  33040 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatccgttagcacaaatagtccctgccgtc 32964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 29318 - 29394
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtc 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| || |||| ||||||||||||    
T  29318 aatagtccttacatttcaataaatgtttttaaaatccctacatttttcatccgttagcacaaatagtccctgccgtc 29394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 20831147 - 20831071
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtc 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||| ||||||||||||    
T  20831147 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatccgttagcacaaatagtccctgccgtc 20831071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 20826772 - 20826848
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtc 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| || | || |||| ||||||||||||    
T  20826772 aatagtccttacatttcaataaatgtttttaaaatccctacatttttcatccgtcagcacaaatagtccctgccgtc 20826848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 35300787 - 35300859
Alignment:
Q  11 aaatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| || ||||||||||||    
T  35300787 aaataatccttacatttcaataaatgtttttaaaatccctacatttttcatccgttagcacaaatggtccctg 35300859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 4199496 - 4199568
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgc 84  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| | ||||| ||||||||    
T  4199496 aatagtccttatatttcaataaatgtttttaaaatccctacatttttcatccgttagcgtaaatagtccctgc 4199568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 42606323 - 42606394
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| || |||| | ||||| |||||||    
T  42606323 aatagtccctacatttcaataaatgtttttaaaatccctacattttttctccgttagcgtaaatagtccctg 42606394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 45539686 - 45539615
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| || |||| | ||||| |||||||    
T  45539686 aatagtccctacatttcaataaatgtttttaaaatccctacattttttctccgttagcgtaaatagtccctg 45539615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 22406888 - 22406932
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  22406888 tagtccttacatttcaataaatgtttttaaaatccctacattttt 22406932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 34950231 - 34950187
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34950231 tagtccttacatttcaataaatgtttttaaaatccctacattttt 34950187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 2388675 - 2388746
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||| || |||| | ||||| |||||||    
T  2388675 aatagtctctacatttcaataaatgtttttaaaatccctacattttttctccgttagcttaaatagtccctg 2388746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 36899297 - 36899344
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  36899297 aatagtccctacatttcaataaatgtttttaaaatccctacatttttt 36899344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 46689725 - 46689796
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||  || |||| | ||||| |||||||    
T  46689725 aatagtccctacatttcaataaatgtttttaaaatccctacatttttcctccgttagcgtaaatagtccctg 46689796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 7248543 - 7248489
Alignment:
Q  4 ctttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||    
T  7248543 ctttaaaaaatagtcctcacattttaataaatatttttaaaatccctacattttt 7248489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 33225531 - 33225634
Alignment:
Q  11 aaatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtc----ttctgtccagtcaccaaa 106  Q
    ||||||||| ||||||| | ||||||||||||||||||| ||||||| ||||||||| || |  | ||||||||||||    | ||||||||||||||||    
T  33225531 aaatagtccctacatttaagtaaatgtttttaaaatccccacattttatatctgttaccaaatttagtccctgccgtcaatttcctgtccagtcaccaaa 33225630  T
Q  107 caga 110  Q
    ||||    
T  33225631 caga 33225634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 45539252 - 45539298
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  45539252 aatagtccctacatttcaataaatgtttttaaaatccctacattttt 45539298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 48868642 - 48868588
Alignment:
Q  3 actttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    ||||| || |||||||| |||||||||||||||||||||||||||||||||||||    
T  48868642 actttgaataatagtccctacatttcaataaatgtttttaaaatccctacatttt 48868588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 22407322 - 22407273
Alignment:
Q  10 aaaatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  22407322 aaaatagtccctacatttcaatgaatgtttttaaaatccctacatttttt 22407273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 27475773 - 27475729
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  27475773 tagtccttatatttcaataaatgtttttaaaatccctacattttt 27475729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 34949799 - 34949846
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  34949799 aatagtccctacatttcaatgaatgtttttaaaatccctacatttttt 34949846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 54588491 - 54588546
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||||| || |||||||| |||||||||||||||||||||||||| ||||||||||    
T  54588491 gactttgaagaatagtccatacatttcaataaatgtttttaaaattcctacatttt 54588546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 2389109 - 2389063
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  2389109 aatagtccctacattttaataaatgtttttaaaatccctacattttt 2389063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 4199932 - 4199886
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||    
T  4199932 aatagtccctacatttcaataaatgtttttaaaatccctatattttt 4199886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 25770535 - 25770577
Alignment:
Q  9 aaaaatagtccttacatttcaataaatgtttttaaaatcccta 51  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  25770535 aaaaatagtctttacatttcaataaatgtttttaaaatcccta 25770577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 36899731 - 36899685
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||    
T  36899731 aatagtccctacatttcaataaatgtttttaaaatccctatattttt 36899685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 42606757 - 42606711
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||    
T  42606757 aatagtccctacatttcaataaatatttttaaaatccctacattttt 42606711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 46690159 - 46690113
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  46690159 aataatccctacatttcaataaatgtttttaaaatccctacattttt 46690113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 48867685 - 48867739
Alignment:
Q  3 actttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||||||| |||||||| ||||||||||||||| |||||||||||| ||||||||    
T  48867685 actttaaataatagtccctacatttcaataaatatttttaaaatccttacatttt 48867739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 51587566 - 51587620
Alignment:
Q  5 tttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||| ||||||| |||||||||||||||| ||||||||||||||| |||||||    
T  51587566 tttaaagaatagtcattacatttcaataaatatttttaaaatccctatatttttt 51587620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 27475433 - 27475475
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacat 54  Q
    |||||||| ||||||||||| ||||||||||||||||||||||    
T  27475433 aatagtccctacatttcaatgaatgtttttaaaatccctacat 27475475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 44504432 - 44504374
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatca 70  Q
    |||||||||||||||||| ||||||||||||||||||  ||||||| | || |||||||    
T  44504432 aatagtccttacatttcattaaatgtttttaaaatcctcacattttatctccgttatca 44504374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 131993 - 131948
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatc 47  Q
    |||||| ||| ||||||||||||||||||||| |||||||||||||    
T  131993 gactttgaaatatagtccttacatttcaataagtgtttttaaaatc 131948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 26741187 - 26741138
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatcccta 51  Q
    |||||| ||||||| ||||||||||||||||||||| ||||||| |||||    
T  26741187 gactttgaaaaataatccttacatttcaataaatgtctttaaaaacccta 26741138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 35301940 - 35301863
Alignment:
Q  11 aaatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtc 88  Q
    |||| ||||||| ||||| |||||| |||||||||| |||| ||||||| || |||| || |||| ||||||||||||    
T  35301940 aaatggtccttatatttcgataaatatttttaaaattcctatattttttctcagttagcacaaatagtccctgccgtc 35301863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 44504299 - 44504344
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatc 47  Q
    |||||| |||| |||||||| |||||||||||||||||||||||||    
T  44504299 gactttgaaaattagtccttgcatttcaataaatgtttttaaaatc 44504344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 50732388 - 50732437
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatcccta 51  Q
    |||||| |||||||||| || |||||||||||||||||| ||||||||||    
T  50732388 gacttttaaaaatagtctttgcatttcaataaatgttttcaaaatcccta 50732437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 50780467 - 50780418
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatcccta 51  Q
    |||||| |||||||||| || |||||||||||||||||| ||||||||||    
T  50780467 gacttttaaaaatagtctttgcatttcaataaatgttttcaaaatcccta 50780418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 132105 - 132069
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatcc 48  Q
    |||||||||||||||||| ||||||||||||||||||    
T  132105 aatagtccttacatttcattaaatgtttttaaaatcc 132069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 3799765 - 3799811
Alignment:
Q  11 aaatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    ||||||||  ||||||| | |||||||||||||||||||||||||||    
T  3799765 aaatagtctctacatttaagtaaatgtttttaaaatccctacatttt 3799811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 47343772 - 47343726
Alignment:
Q  11 aaatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    ||||||||  ||||||| | |||||||||||||||||||||||||||    
T  47343772 aaatagtctctacatttaagtaaatgtttttaaaatccctacatttt 47343726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 9217864 - 9217909
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||||||| ||||||||| ||||||||||||||||||  |||||||    
T  9217864 aatagtccctacatttcattaaatgtttttaaaatcctcacatttt 9217909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 9218397 - 9218348
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatcccta 51  Q
    |||||| |||||||||  || ||||||||||||||||||| |||||||||    
T  9218397 gactttgaaaaatagtatttgcatttcaataaatgttttttaaatcccta 9218348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 22814340 - 22814385
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||||||| ||||||||| ||||||||||||||||||  |||||||    
T  22814340 aatagtccatacatttcattaaatgtttttaaaatcctcacatttt 22814385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 34743511 - 34743458
Alignment:
Q  17 tccttacatttcaataaatgtttttaaaatccctacattttttatctgttatca 70  Q
    ||||||||||||| |||||||||| |||||||  ||||||| ||| ||||||||    
T  34743511 tccttacatttcattaaatgttttaaaaatcctcacattttatatatgttatca 34743458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 37172288 - 37172337
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatcccta 51  Q
    |||||| ||||||| |||||| ||||||| |||||||||||||| |||||    
T  37172288 gactttgaaaaataatccttagatttcaacaaatgtttttaaaaccccta 37172337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 51755960 - 51755915
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||||||| ||||||||| ||||||||||||||||||  |||||||    
T  51755960 aatagtccctacatttcattaaatgtttttaaaatcctcacatttt 51755915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 50732261 - 50732305
Alignment:
Q  4 ctttaaaaaatagtccttacatttcaataaatgtttttaaaatcc 48  Q
    |||| ||||||||||| ||||||||| ||||| ||||||||||||    
T  50732261 ctttgaaaaatagtccatacatttcattaaatatttttaaaatcc 50732305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 50780594 - 50780550
Alignment:
Q  4 ctttaaaaaatagtccttacatttcaataaatgtttttaaaatcc 48  Q
    |||| ||||||||||| ||||||||| ||||| ||||||||||||    
T  50780594 ctttgaaaaatagtccatacatttcattaaatatttttaaaatcc 50780550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 53)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 47053805 - 47053881
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtc 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| || |||| ||||||||||||    
T  47053805 aatagtccttacatttcaataaatgtttttaaaatccctacatttttcatccgttagcacaaatagtccctgccgtc 47053881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 47058553 - 47058477
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtc 88  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| || |||| ||||||||||||    
T  47058553 aatagtctttacatttcaataaatgtttttaaaatccctacattttttatccgttagcacaaatagtccctgccgtc 47058477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 28505252 - 28505324
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgc 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  || |||| | ||||| ||||||||    
T  28505252 aatagtccttacatttcaataaatgtttttaaaatccctacatttttcctccgttagcgtaaatagtccctgc 28505324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 12108335 - 12108280
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgtta 67  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  12108335 aatagtccctacatttcaataaatgtttttaaaatccctacattttttctctgtta 12108280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 40841505 - 40841576
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| || |||| | ||||| |||||||    
T  40841505 aatagtccctacatttcaataaatgtttttaaaatccctacattttttctccgttagcgtaaatagtccctg 40841576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 49426407 - 49426324
Alignment:
Q  3 actttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccg 86  Q
    |||||||| |||||||||||||||||||||||| |||||||||||| ||||||||   || |||| || |||||||||||||||    
T  49426407 actttaaataatagtccttacatttcaataaatatttttaaaatccttacattttacttccgttaacacaaatggtccctgccg 49426324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 21235071 - 21235117
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21235071 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 21235117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 29691795 - 29691746
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatcccta 51  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29691795 gactttaaaaaatagtctttacatttcaataaatgtttttaaaatcccta 29691746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 1317106 - 1317150
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  1317106 tagtccttacatttcaataaatgtttttaaaatccctacattttt 1317150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 2669484 - 2669416
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtcc 80  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| || |||| | ||||| ||||    
T  2669484 aatagtccctacatttcaataaatgtttttaaaatccctacattttttctccgttagcgtaaatagtcc 2669416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 7165037 - 7164919
Alignment:
Q  11 aaatagtccttacatt-tcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtc---ttctgtccagtcaccaaa 106  Q
    ||||| |||||||||| || ||||||||||||||||| || ||||||||  ||| ||||||||||| ||||| ||||||   ||||  ||| ||||||||    
T  7165037 aaataatccttacattgtcgataaatgtttttaaaattcccacatttttactctattatcataaatagtccccgccgtcaatttctacccaatcaccaaa 7164938  T
Q  107 cagaatggtgatgtggcaa 125  Q
    | |||||||||||||||||    
T  7164937 cggaatggtgatgtggcaa 7164919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 10580074 - 10580122
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatccct 50  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10580074 gactttgaaaaatagtccttacatttcaataaatgtttttaaaatccct 10580122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 12923117 - 12923073
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  12923117 tagtccttacatttcaataaatgtttttaaaatccctacattttt 12923073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 30545759 - 30545803
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  30545759 tagtccttacatttcaataaatgtttttaaaatccctacattttt 30545803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 43979603 - 43979647
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  43979603 tagtccttacatttcaataaatgtttttaaaatccctacattttt 43979647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 46263110 - 46263066
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  46263110 tagtccttacatttcaataaatgtttttaaaatccctacattttt 46263066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 12922685 - 12922732
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  12922685 aatagtccctacatttcaataaatgtttttaaaatccctacatttttt 12922732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 28957788 - 28957717
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||  || |||| | ||||| |||||||    
T  28957788 aatagtccctacatttcaataaatgtttttaaaatccctacatttttcctccgttagcgtaaatagtccctg 28957717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 38026153 - 38026082
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||  || |||| | ||||| |||||||    
T  38026153 aatagtccctacatttcaataaatgtttttaaaatccctacatttttcctccgttagcgtaaatagtccctg 38026082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 2669050 - 2669096
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  2669050 aatagtccctacatttcaataaatgtttttaaaatccctacattttt 2669096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 17287522 - 17287576
Alignment:
Q  3 actttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||||||| |||||||||||||||||||||||| |||||||||| ||||||||||    
T  17287522 actttaaataatagtccttacatttcaataaatatttttaaaattcctacatttt 17287576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 17288428 - 17288374
Alignment:
Q  3 actttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    ||||| || |||||||| |||||||||||||||||||||||||||||||||||||    
T  17288428 actttgaataatagtccctacatttcaataaatgtttttaaaatccctacatttt 17288374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 40841939 - 40841893
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  40841939 aatagtccctacatttcaataaatgtttttaaaatccctacattttt 40841893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 54167538 - 54167584
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  54167538 aatagtccttatatttcaataaatgtttttaaaatccctacattttt 54167584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 789936 - 789985
Alignment:
Q  10 aaaatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  789936 aaaatagtccatacatttcaatgaatgtttttaaaatccctacatttttt 789985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 55348015 - 55347970
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  55348015 aatagtccctacatttcaataaatgtttttaaaatccctacatttt 55347970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 790370 - 790326
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  790370 tagtccttacatttcaataaatgtttttaaaattcctacattttt 790326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 54142358 - 54142414
Alignment:
Q  1 cgactttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    ||||||| || |||||||| |||||||||||||||||||||||||||| ||||||||    
T  54142358 cgactttgaagaatagtccatacatttcaataaatgtttttaaaatccttacatttt 54142414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 31228356 - 31228285
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||  || |||| | ||||| |||||||    
T  31228356 aatagttcctacatttcaataaatgtttttaaaatccctacatttttcctccgttagcgtaaatagtccctg 31228285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 43980035 - 43979988
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  43980035 aatagtccctacatttcaatgaatgtttttaaaatccctacatttttt 43979988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 54143558 - 54143471
Alignment:
Q  1 cgactttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtc 88  Q
    ||||||| || |||||||| ||||||| |||||||||||||||||||| |||||||| | || ||||  | || ||||||||||||||    
T  54143558 cgactttgaagaatagtccctacattttaataaatgtttttaaaatccttacattttctctccgttactacaattggtccctgccgtc 54143471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 1791431 - 1791389
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaa 44  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  1791431 gactttgaaaaatagtccttacatttcaataaatgtttttaaa 1791389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 21235507 - 21235461
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||    
T  21235507 aatagtccctacatttcaataaatgtttttaaaatctctacattttt 21235461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 28957354 - 28957400
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  28957354 aataatccctacatttcaataaatgtttttaaaatccctacattttt 28957400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 31227922 - 31227968
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  31227922 aataatccctacatttcaataaatgtttttaaaatccctacattttt 31227968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 49424489 - 49424543
Alignment:
Q  3 actttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    ||||| || ||||||| |||||| |||||||||||||||||||||||||||||||    
T  49424489 actttgaataatagtctttacatatcaataaatgtttttaaaatccctacatttt 49424543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 55347604 - 55347650
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  55347604 aatagtccctacattttaataaatgtttttaaaatccctacattttt 55347650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 5545067 - 5545018
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatcccta 51  Q
    |||||| ||||||||| |||||||||||||||||||||||||||| ||||    
T  5545067 gactttgaaaaatagttcttacatttcaataaatgtttttaaaatgccta 5545018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 26168200 - 26168245
Alignment:
Q  3 actttaaaaaatagtccttacatttcaataaatgtttttaaaatcc 48  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||    
T  26168200 actttagaaaatagtccttgcatttcaataaatgtttttaaaatcc 26168245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7118050 - 7118002
Alignment:
Q  1 cgactttaaaaaatagtccttacatttcaataaatgtttttaaaatccc 49  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||||||||    
T  7118050 cgactttgaaaaatagtccttaaatttcaatacatgtttttaaaatccc 7118002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 1317540 - 1317494
Alignment:
Q  10 aaaatagtccttacatttcaataaatgtttttaaaatccctacattt 56  Q
    |||||||||| ||||||||||| |||||||||||||| |||||||||    
T  1317540 aaaatagtccctacatttcaatgaatgtttttaaaattcctacattt 1317494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 38025719 - 38025765
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||   |||||||||||||||||||||    
T  38025719 aatagtccttacatttcaataaaaaattttaaaatccctacattttt 38025765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 46262676 - 46262725
Alignment:
Q  10 aaaatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||||| ||||||||||| ||||||||||||||  |||||||||||    
T  46262676 aaaatagtccctacatttcaatgaatgtttttaaaatttctacatttttt 46262725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 28505685 - 28505641
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||||    
T  28505685 tagtccctacattttaataaatgtttttaaaatccctatattttt 28505641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 54168879 - 54168823
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||| || |||| ||| ||||||| ||||||| ||||||||||||||||||||||    
T  54168879 gactttgaagaataatccctacattttaataaatatttttaaaatccctacattttt 54168823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 3296990 - 3296919
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||||| ||| ||||| |||||||||||||||||| |||||||| | || ||||||| || | |||||||    
T  3296990 aatagtccctacgtttcattaaatgtttttaaaatccttacattttatctccgttatcaaaattagtccctg 3296919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 30546192 - 30546145
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||  ||||||||||| ||| |||||||||||||||||||||||    
T  30546192 aatagtctctacatttcaatgaatatttttaaaatccctacatttttt 30546145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 35166751 - 35166708
Alignment:
Q  1 cgactttaaaaaatagtccttacatttcaataaatgtttttaaa 44  Q
    ||||||| || |||||||||||||||| ||||||||||||||||    
T  35166751 cgactttgaagaatagtccttacattttaataaatgtttttaaa 35166708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 3296751 - 3296793
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaa 44  Q
    |||||| || |||||||||||||||| ||||||||||||||||    
T  3296751 gactttgaagaatagtccttacattttaataaatgtttttaaa 3296793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 29691569 - 29691627
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatca 70  Q
    |||||||| ||||||||| ||||||||||||||||||  ||||||| | || |||||||    
T  29691569 aatagtccctacatttcattaaatgtttttaaaatcctcacattttatctccgttatca 29691627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 34129346 - 34129288
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatca 70  Q
    |||||||| ||||||||| ||||| ||||||||||||  ||||||| | ||||||||||    
T  34129346 aatagtccctacatttcattaaatatttttaaaatcctcacattttatctctgttatca 34129288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 12107758 - 12107794
Alignment:
Q  21 tacatttcaataaatgtttttaaaatccctacatttt 57  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  12107758 tacattttaataaatgtttctaaaatccctacatttt 12107794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 35468887 - 35468919
Alignment:
Q  19 cttacatttcaataaatgtttttaaaatcccta 51  Q
    ||||||||||||||||||||| |||||||||||    
T  35468887 cttacatttcaataaatgtttctaaaatcccta 35468919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 47)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 44930027 - 44930103
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtc 88  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| |||| || |||| ||||||||||||    
T  44930027 aatagtccttacatttcaataaatatttttaaaatccctacattttttatccgttagcacaaatagtccctgccgtc 44930103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 44934729 - 44934653
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtc 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| || | || |||| ||||||||||||    
T  44934729 aatagtccttacatttcaataaatgtttttaaaatccctacatttttcatccgtcagcacaaatagtccctgccgtc 44934653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 18107481 - 18107399
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgc 84  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||||||||| ||||||  || ||||||||||||||| |||||    
T  18107481 gactttaaagaataatccttacattttaataaatgtttttaaaatccctaaatttttcctccgttatcataaatggttcctgc 18107399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 10709519 - 10709565
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  10709519 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 10709565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 10708066 - 10708135
Alignment:
Q  11 aaatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtcc 80  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| || |||| ||||    
T  10708066 aaatagtccttacatttcaataaatgtttttaaaattcctacatttttcatccgttagcacaaatagtcc 10708135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 3854112 - 3854156
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  3854112 tagtccttacatttcaataaatgtttttaaaatccctacattttt 3854156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 22701558 - 22701602
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  22701558 tagtccttacatttcaataaatgtttttaaaatccctacattttt 22701602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 39097003 - 39096931
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgc 84  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||  || |||| | ||||| ||||||||    
T  39097003 aataatccttacatttcaataaatgtttttaaaatccctacatttttcctccgttagcgtaaatagtccctgc 39096931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 39947142 - 39947086
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||| || ||||||||||||||||||||||||||||||||||||| |||||||||    
T  39947142 gactttgaacaatagtccttacatttcaataaatgtttttaaaatccgtacattttt 39947086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 1804709 - 1804638
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||  || |||| | ||||| |||||||    
T  1804709 aatagtccctacatttcaataaatgtttttaaaatccctacatttttcctccgttagcgtaaatagtccctg 1804638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 6476130 - 6476201
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||  || |||| | ||||| |||||||    
T  6476130 aatagtccctacatttcaataaatgtttttaaaatccctacatttttcctccgttagcgtaaatagtccctg 6476201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 11451233 - 11451162
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||  || |||| | ||||| |||||||    
T  11451233 aatagtccctacatttcaataaatgtttttaaaatccctacatttttcctccgttagcgtaaatagtccctg 11451162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 27377692 - 27377763
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||  || |||| | ||||| |||||||    
T  27377692 aatagtccctacatttcaataaatgtttttaaaatccctacatttttcctccgttagcgtaaatagtccctg 27377763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 39096567 - 39096614
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39096567 aatagtccttacatttcaataaatgtttttaaaatccatacatttttt 39096614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 1804275 - 1804321
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  1804275 aatagtccctacatttcaataaatgtttttaaaatccctacattttt 1804321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 6476564 - 6476518
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  6476564 aatagtccctacatttcaataaatgtttttaaaatccctacattttt 6476518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 18105760 - 18105875
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtc---ttctgtccagtcaccaaaca 108  Q
    |||| ||| |||||||||||||| ||||||||||| |||||||||||  ||||||| ||||||| || | |||| ||   || | |||||||| ||||||    
T  18105760 aatattccctacatttcaataaaggtttttaaaattcctacatttttcctctgttagcataaatagttcatgccatcaatttttatccagtcatcaaaca 18105859  T
Q  109 gaatggtgatgtggca 124  Q
    ||||||||| ||||||    
T  18105860 gaatggtgaggtggca 18105875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 23222918 - 23222833
Alignment:
Q  3 actttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtc 88  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||  ||||||| | || ||||  | || ||||||||||||||    
T  23222918 actttaaataatagtccttacatttcaatatatgtttttaaaatcctcacattttctttccgttactacaattggtccctgccgtc 23222833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 24093363 - 24093412
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatcccta 51  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  24093363 gactttgaaaaatagtccttgcatttcaataaatgtttttaaaatcccta 24093412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 32861096 - 32861047
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatcccta 51  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  32861096 gactttgaaaaatagtccttatatttcaataaatgtttttaaaatcccta 32861047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 12089740 - 12089784
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  12089740 tagttcttacatttcaataaatgtttttaaaatccctacattttt 12089784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 39945876 - 39945932
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||| || ||||||||||||||||||||||||||||||||||||| || ||||||    
T  39945876 gactttgaacaatagtccttacatttcaataaatgtttttaaaatccttatattttt 39945932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 3854544 - 3854497
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  3854544 aatagtccctacatttcaatgaatgtttttaaaatccctacatttttt 3854497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 12090172 - 12090125
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  12090172 aatagtccctacatttcaatgaatgtttttaaaatccctacatttttt 12090125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 34037852 - 34037899
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  34037852 aatagtccctacatttcaatgaatgtttttaaaatccctacatttttt 34037899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 2036656 - 2036594
Alignment:
Q  5 tttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgtta 67  Q
    |||||| |||||||| ||||||||||| ||||||||||||||||||| ||||| | |||||||    
T  2036656 tttaaagaatagtccctacatttcaattaatgtttttaaaatccctatattttatctctgtta 2036594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 10711056 - 10711002
Alignment:
Q  4 ctttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||| | ||||| |||||||||||| |||||||||    
T  10711056 ctttaaaaaatagtccttacattttagtaaatatttttaaaatccttacattttt 10711002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 23221867 - 23221924
Alignment:
Q  1 cgactttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    ||||||| || |||||| | ||||||||||||||||||||||| ||||||||||||||    
T  23221867 cgactttgaagaatagtacctacatttcaataaatgtttttaatatccctacattttt 23221924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 2035645 - 2035697
Alignment:
Q  5 tttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||||| |||| ||| ||||||| |||||||||||||||||||||||||||||    
T  2035645 tttaaagaataatccctacattttaataaatgtttttaaaatccctacatttt 2035697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 10710886 - 10710830
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||| || ||||| |||| |||||||||||||||||||||||| |||||||||||    
T  10710886 gactttgaagaatagcccttgcatttcaataaatgtttttaaaattcctacattttt 10710830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 26525507 - 26525551
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||    
T  26525507 tagttcttacatttcaataaatatttttaaaatccctacattttt 26525551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 26525941 - 26525894
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||| || |||||||||||||||||||||||||||||| |||||    
T  26525941 aatagtccctatatttcaataaatgtttttaaaatccctacaattttt 26525894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 2191261 - 2191319
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatca 70  Q
    |||||||||||||||||| ||||||||||||||||||  ||||||| | || |||||||    
T  2191261 aatagtccttacatttcattaaatgtttttaaaatcctcacattttatctccgttatca 2191319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 11450799 - 11450845
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||||    
T  11450799 aataatccctacatttcaataaatgttttaaaaatccctacattttt 11450845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 22701982 - 22701944
Alignment:
Q  21 tacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  22701982 tacatttcaatgaatgtttttaaaatccctacatttttt 22701944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 27378126 - 27378080
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||||    
T  27378126 aataatccctacatttcaataaatgttttaaaaatccctacattttt 27378080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 18105903 - 18105984
Alignment:
Q  141 aaatggattgggtcaaacaaaataggtaaaataagacccgatccatagattcaacccatttcatagtgattccaatccctaa 222  Q
    |||||||||| | ||||| |||| ||||||| ||||||| |  ||| ||| ||||||||||||||  |||||||||||||||    
T  18105903 aaatggattgtgccaaacgaaatgggtaaaacaagacccaactcatggatccaacccatttcatatggattccaatccctaa 18105984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 3624969 - 3624925
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaat 46  Q
    |||||| || |||||||| ||||||||||||||||||||||||||    
T  3624969 gactttgaagaatagtccctacatttcaataaatgtttttaaaat 3624925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 2517457 - 2517515
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatca 70  Q
    |||||||| ||||||||| ||||||||||||||||||  ||||||| | || |||||||    
T  2517457 aatagtccctacatttcattaaatgtttttaaaatcctcacattttatctccgttatca 2517515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 21182351 - 21182385
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaat 46  Q
    |||||||||||||||||| ||||||||||||||||    
T  21182351 aatagtccttacatttcattaaatgtttttaaaat 21182385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 34038290 - 34038252
Alignment:
Q  20 ttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  34038290 ttacatttcaataaatatttttaaaattcctacattttt 34038252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 21216967 - 21217012
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||||||| ||||||||| ||||||||||||||||||  |||||||    
T  21216967 aatagtccctacatttcattaaatgtttttaaaatcctcacatttt 21217012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 21217367 - 21217322
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||||||| ||||||||| ||||||||||||||||||  |||||||    
T  21217367 aatagtccctacatttcattaaatgtttttaaaatcctcacatttt 21217322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 21265035 - 21265080
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||||||| ||||||||| ||||||||||||||||||  |||||||    
T  21265035 aatagtccctacatttcattaaatgtttttaaaatcctcacatttt 21265080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 21265435 - 21265390
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||||||| ||||||||| ||||||||||||||||||  |||||||    
T  21265435 aatagtccctacatttcattaaatgtttttaaaatcctcacatttt 21265390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 32860850 - 32860903
Alignment:
Q  4 ctttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||| |||||||||| ||| |||||| ||||||||||||||||||  |||||||    
T  32860850 ctttgaaaaatagtcgttatatttcattaaatgtttttaaaatcctaacatttt 32860903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 24093200 - 24093236
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatcc 48  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  24093200 aatagtccctacatttcattaaatgtttttaaaatcc 24093236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 36155304 - 36155430
Alignment:
Q  1 cgactttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtc---ttctgtcca 97  Q
    ||||||| || |||||||| ||||||| |||||||||||||||||||| |||||||||  || |||||||| ||| ||||| ||||||   ||||  |||    
T  36155304 cgactttgaataatagtccctacattttaataaatgtttttaaaatccttacatttttactccgttatcattaatagtccccgccgtcaatttcttccca 36155403  T
Q  98 gtcaccaaacagaatggtgatgtggca 124  Q
    |||||||||||||||| ||| ||||||    
T  36155404 gtcaccaaacagaatgctgacgtggca 36155430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 29917584 - 29917516
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtcc 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||| | ||||| ||||    
T  29917584 aatagtccttacatttcaataaatgtttttaaaatccctacattttttctccgttagcgtaaatagtcc 29917516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 4624567 - 4624624
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4624567 gactttgaagaatagtctttacatttcaataaatgtttttaaaatccctacatttttt 4624624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 21006003 - 21005956
Alignment:
Q  4 ctttaaaaaatagtccttacatttcaataaatgtttttaaaatcccta 51  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  21006003 ctttgaaaaatagtccttacatttcaataaatgtttttaaaatcccta 21005956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 29917148 - 29917195
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  29917148 aatagtccctacatttcaataaatgtttttaaaatccctacatttttt 29917195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 4624403 - 4624476
Alignment:
Q  11 aaatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgc 84  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||  || |||| || |||| ||||||||    
T  4624403 aaatcgtctttacatttcaataaatgtttttaaaatccctacatttttcctccgttagcacaaatagtccctgc 4624476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 44024432 - 44024481
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatcccta 51  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  44024432 gactttgaaaaatagtccttacatttcaataaatatttttaaaatcccta 44024481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 12734648 - 12734604
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  12734648 tagttcttacatttcaataaatgtttttaaaatccctacattttt 12734604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 26720365 - 26720420
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgtta 67  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||||||| |||||||    
T  26720365 aatagtccctacatttcattaaatatttttaaaatccctacattttttctctgtta 26720420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 24846006 - 24846052
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  24846006 aatagtccttacatttcaataaatgtttttaaaattcctatattttt 24846052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 45369176 - 45369134
Alignment:
Q  4 ctttaaaaaatagtccttacatttcaataaatgtttttaaaat 46  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  45369176 ctttaaaaaataatccttacatttcaataaatgtttttaaaat 45369134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 11089178 - 11089133
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatc 47  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||    
T  11089178 gactttgaaaaatagttcttacatttcaataaatgtttttaaaatc 11089133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 16682564 - 16682621
Alignment:
Q  1 cgactttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||| ||||||| ||||||||||| ||||||||||||||| | |||||||||    
T  16682564 cgactttaaagaatagtcattacatttcaaaaaatgtttttaaaattcttacattttt 16682621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 6297918 - 6297850
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatca 70  Q
    |||||| || |||||||||||||||||| ||||||||||||||||||  ||||||| | || |||||||    
T  6297918 gactttgaagaatagtccttacatttcattaaatgtttttaaaatcctcacattttatctccgttatca 6297850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 36156415 - 36156359
Alignment:
Q  1 cgactttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    ||||||| || ||||||| || |||||||||||||||||||||||||| ||||||||    
T  36156415 cgactttgaataatagtctttgcatttcaataaatgtttttaaaatccttacatttt 36156359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 12734216 - 12734263
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||| ||||||||||| ||| |||||||||||||||||||||||    
T  12734216 aatagtccctacatttcaatgaatatttttaaaatccctacatttttt 12734263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 6298081 - 6298023
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatca 70  Q
    |||||||||||||||||| ||||||||||||||||||  ||||||| | || |||||||    
T  6298081 aatagtccttacatttcattaaatgtttttaaaatcctcacattttatttccgttatca 6298023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 10047692 - 10047734
Alignment:
Q  9 aaaaatagtccttacatttcaataaatgtttttaaaatcccta 51  Q
    ||||||||||||| ||||||| |||||||||||||||||||||    
T  10047692 aaaaatagtccttgcatttcactaaatgtttttaaaatcccta 10047734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 20682741 - 20682787
Alignment:
Q  1 cgactttaaaaaatagtccttacatttcaataaatgtttttaaaatc 47  Q
    ||||||| || |||||||||||||||| |||||||||||||||||||    
T  20682741 cgactttgaagaatagtccttacattttaataaatgtttttaaaatc 20682787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 4694479 - 4694434
Alignment:
Q  11 aaatagtccttacatttcaataaatgtttttaaaatccctacattt 56  Q
    ||||||||| ||||||| | ||||||||||||||||||||||||||    
T  4694479 aaatagtccctacatttaagtaaatgtttttaaaatccctacattt 4694434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 6297669 - 6297718
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatcccta 51  Q
    |||||| |||| ||||  ||||||||||||||||||||||||||||||||    
T  6297669 gactttgaaaattagtttttacatttcaataaatgtttttaaaatcccta 6297718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 13315239 - 13315304
Alignment:
Q  5 tttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatca 70  Q
    |||||| |||||||| ||||||||| |||||||||||||||||   ||||||| | ||||||||||    
T  13315239 tttaaagaatagtccctacatttcattaaatgtttttaaaatcatcacattttatctctgttatca 13315304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 20682977 - 20682924
Alignment:
Q  5 tttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||| ||| |||||||||||| ||||||||||||||||||| | ||||||||    
T  20682977 tttaaagaatggtccttacattttaataaatgtttttaaaatctccacattttt 20682924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 34614070 - 34614171
Alignment:
Q  21 tacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtc---ttctgtccagtcaccaaacagaatggtga 117  Q
    |||||||||||||||||||||||||| | |||||||||  | |||| |||||||| |||||| | |||   |||| |||||||| ||||| |||||||||    
T  34614070 tacatttcaataaatgtttttaaaat-cttacatttttactatgttgtcataaatagtccct-ctgtcaatttctatccagtcatcaaacggaatggtga 34614167  T
Q  118 tgtg 121  Q
    ||||    
T  34614168 tgtg 34614171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 40304727 - 40304845
Alignment:
Q  11 aaatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtc----ttctgtccagtcaccaaa 106  Q
    ||||||||| ||||||| | ||||| ||||||||||||  ||||||| ||||||||| || |  | ||||||||||||    | ||||||||||||||||    
T  40304727 aaatagtccatacatttaagtaaatatttttaaaatcctcacattttatatctgttaccaaatttagtccctgccgtcaatttcctgtccagtcaccaaa 40304826  T
Q  107 cagaatggtgatgtggcaa 125  Q
    | || || |||| ||||||    
T  40304827 cggattgttgatttggcaa 40304845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 12489572 - 12489517
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttat 68  Q
    |||||||||||||||||| ||| |||||||||||||| |||||||| | ||||||||    
T  12489572 aatagtccttacatttcattaa-tgtttttaaaatccttacattttatctctgttat 12489517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 21006176 - 21006096
Alignment:
Q  4 ctttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgc 84  Q
    |||| ||||||||||| ||||||| | ||||||||||||||||||  ||||||| | || ||||||| || || |||||||    
T  21006176 ctttgaaaaatagtccctacattttattaaatgtttttaaaatcctcacattttatctccgttatcaaaattgatccctgc 21006096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 44148621 - 44148697
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtc 88  Q
    |||||||| ||||||| |||||| |||||||||||||  ||||||||  || ||||||| |||| |||||| |||||    
T  44148621 aatagtccctacattttaataaacgtttttaaaatcctcacatttttactccgttatcaaaaatagtccctaccgtc 44148697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 6297506 - 6297564
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatca 70  Q
    |||||| | ||||||||| ||||||||||||||||||  ||||||| | ||||||||||    
T  6297506 aatagttcctacatttcattaaatgtttttaaaatcctcacattttctctctgttatca 6297564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 17914241 - 17914299
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatca 70  Q
    |||||||| ||||||| | ||||||||||||||||||  ||||||| | ||||||||||    
T  17914241 aatagtccctacattttattaaatgtttttaaaatcctcacattttatctctgttatca 17914299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 124
Target Start/End: Complemental strand, 6761473 - 6761444
Alignment:
Q  95 ccagtcaccaaacagaatggtgatgtggca 124  Q
    ||||||||||||||||||||||||||||||    
T  6761473 ccagtcaccaaacagaatggtgatgtggca 6761444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 9800389 - 9800344
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||||||| || |||||| |||||||||||||||||| ||||||||    
T  9800389 aatagtccatatatttcattaaatgtttttaaaatccttacatttt 9800344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 22601542 - 22601587
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||||||| ||||||| |||||||||||||||||| | ||||||||    
T  22601542 aatagtccctacatttaaataaatgtttttaaaattcttacatttt 22601587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 16662212 - 16662268
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttat 68  Q
    |||||||| ||||||||| |||||||||||||||| |  ||||||| | ||||||||    
T  16662212 aatagtccctacatttcattaaatgtttttaaaattctcacattttatctctgttat 16662268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 18443219 - 18443291
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgc 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| | ||||| ||||||||    
T  18443219 aatagtccttacatttcaataaatgtttttaaaatccctacatttttcatccgttagcgtaaatagtccctgc 18443291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 884728 - 884772
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  884728 tagtccttacatttcaataaatgtttttaaaatccctacattttt 884772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 1244057 - 1244101
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  1244057 tagtccttacatttcaataaatgtttttaaaatccctacattttt 1244101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 28898504 - 28898460
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28898504 tagtccttacatttcaataaatgtttttaaaatccctacattttt 28898460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 41298290 - 41298334
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  41298290 tagtccttacatttcaataaatgtttttaaaatccctacattttt 41298334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 33847909 - 33847980
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||| || |||| | ||||| |||||||    
T  33847909 aatagtctctacatttcaataaatgtttttaaaatccctacattttttctccgttagcgtaaatagtccctg 33847980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 20544194 - 20544145
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatcccta 51  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  20544194 gactttaaacaatagtccttgcatttcaataaatgtttttaaaatcccta 20544145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 1244489 - 1244442
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  1244489 aatagtccctacatttcaatgaatgtttttaaaatccctacatttttt 1244442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 27310095 - 27310207
Alignment:
Q  16 gtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtc----ttctgtccagtcaccaaacagaa 111  Q
    |||| ||||||||| ||||||||||||||||||||||||||||   | |||| || || ||||||||||||||    |||  || |||||||||||| ||    
T  27310095 gtccctacatttcattaaatgtttttaaaatccctacatttttctaccgttaacaaaattggtccctgccgtctattttccatctagtcaccaaacataa 27310194  T
Q  112 tggtgatgtggca 124  Q
    || ||||||||||    
T  27310195 tgctgatgtggca 27310207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 27311102 - 27311047
Alignment:
Q  4 ctttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    ||||||| |||||||| ||||||||| |||||||||||||||| ||||||||||||    
T  27311102 ctttaaagaatagtccctacatttcattaaatgtttttaaaattcctacatttttt 27311047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 28898072 - 28898119
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  28898072 aatagtccctacatttcaatgaatgtttttaaaatccctacatttttt 28898119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 29784425 - 29784370
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgtta 67  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||  |||||||    
T  29784425 aatagtctttacatttcaataaatatttttaaaatccctacatttttcctctgtta 29784370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 41298722 - 41298675
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  41298722 aatagtccctacatttcaatgaatgtttttaaaatccctacatttttt 41298675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 10466649 - 10466695
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatcc 48  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||    
T  10466649 gactttgaaaaatagtccttacatttcaataaatgtttttataatcc 10466695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 18443655 - 18443609
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||    
T  18443655 aatagtccctacatttcaataaatgtttttaaaatccctatattttt 18443609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 22954089 - 22954135
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  22954089 aatagtccctacattttaataaatgtttttaaaatccctacattttt 22954135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 33848343 - 33848297
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||    
T  33848343 aatagtccctacatttcaataaatgtttttaaaattcctacattttt 33848297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 29783978 - 29784025
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||| || ||||||||||||||||||||||| ||||||||||||    
T  29783978 aatagtccctatatttcaataaatgtttttaaaattcctacatttttt 29784025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 30939610 - 30939564
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||||||    
T  30939610 aatagtccctacatttcattaaatatttttaaaatccctacattttt 30939564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 49053763 - 49053719
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaat 46  Q
    |||||| |||||||||| || ||||||||||||||||||||||||    
T  49053763 gactttgaaaaatagtcattgcatttcaataaatgtttttaaaat 49053719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 11974937 - 11974894
Alignment:
Q  11 aaatagtccttacatttcaataaatgtttttaaaatccctacat 54  Q
    |||||||| || |||||||||||||||||||||||| |||||||    
T  11974937 aaatagtctttgcatttcaataaatgtttttaaaattcctacat 11974894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 20544356 - 20544321
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatc 47  Q
    |||||||||||||||||| |||||||||||||||||    
T  20544356 aatagtccttacatttcattaaatgtttttaaaatc 20544321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 30938631 - 30938686
Alignment:
Q  4 ctttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    ||||||| |||| ||| ||||||| | |||||||||||||||| ||||||||||||    
T  30938631 ctttaaagaataatccatacattttattaaatgtttttaaaattcctacatttttt 30938686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 28838566 - 28838604
Alignment:
Q  9 aaaaatagtccttacatttcaataaatgtttttaaaatc 47  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  28838566 aaaaataatccttacattttaataaatgtttttaaaatc 28838604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 4152757 - 4152810
Alignment:
Q  5 tttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||| |||| ||| ||||||| | | ||||||||||||||||||||||||||    
T  4152757 tttaaagaataatccctacattttattgaatgtttttaaaatccctacattttt 4152810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 11974700 - 11974753
Alignment:
Q  4 ctttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||| ||||||||||  ||||||||| ||||||||||||||||||  |||||||    
T  11974700 ctttgaaaaatagtctgtacatttcattaaatgtttttaaaatcctcacatttt 11974753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 17075663 - 17075618
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||||||| ||||||||| ||||||||||||||||||  |||||||    
T  17075663 aatagtccctacatttcattaaatgtttttaaaatcctcacatttt 17075618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 28852730 - 28852782
Alignment:
Q  5 tttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||||| |||| ||| ||||||||| ||||||||||||||||||  |||||||    
T  28852730 tttaaataatactccctacatttcattaaatgtttttaaaatcctcacatttt 28852782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 14257190 - 14257261
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| || |||| | ||||| |||||||    
T  14257190 aatagtccctacatttcaataaatgtttttaaaatccctacattttttctccgttagcgtaaatagtccctg 14257261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 14712865 - 14712913
Alignment:
Q  3 actttaaaaaatagtccttacatttcaataaatgtttttaaaatcccta 51  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14712865 actttgaaaaatagtccttacatttcaataaatgtttttaaaatcccta 14712913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 33106975 - 33107019
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  33106975 tagtccttacatttcaataaatgtttttaaaatccctacattttt 33107019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 20824207 - 20824278
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||  || |||| | ||||| |||||||    
T  20824207 aatagtccctacatttcaataaatgtttttaaaatccctacatttttcctccgttagcgtaaatagtccctg 20824278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 6162288 - 6162334
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  6162288 aatagtcattacatttcaataaatgtttttaaaatccctacattttt 6162334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 14257624 - 14257578
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  14257624 aatagtccctacatttcaataaatgtttttaaaatccctacattttt 14257578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 20228281 - 20228209
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgc 84  Q
    |||||| | ||||||| ||||||||||||||||||||||||||||||  ||||||| | ||||| ||||||||    
T  20228281 aatagttcctacattttaataaatgtttttaaaatccctacatttttcctctgttagcgtaaatagtccctgc 20228209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 22122265 - 22122193
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgc 84  Q
    |||||| | ||||||| ||||||||||||||||||||||||||||||  ||||||| | ||||| ||||||||    
T  22122265 aatagttcctacattttaataaatgtttttaaaatccctacatttttcctctgttagcgtaaatagtccctgc 22122193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 6162734 - 6162687
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||    
T  6162734 aatagtctctacatttcaataaatgtttttaaaatccctacatttttt 6162687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 15147761 - 15147832
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||  || |||| | ||||| |||||||    
T  15147761 aataatccctacatttcaataaatgtttttaaaatccctacatttttcctccgttagcgtaaatagtccctg 15147832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 33107407 - 33107360
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  33107407 aatagtccctacatttcaatgaatgtttttaaaatccctacatttttt 33107360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 15148195 - 15148149
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||    
T  15148195 aatagtccctacatttcaataaatgattttaaaatccctacattttt 15148149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 20824641 - 20824595
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  20824641 aataatccctacatttcaataaatgtttttaaaatccctacattttt 20824595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 8710386 - 8710341
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||    
T  8710386 aatagtccttacatttcattaaatgtttttaaaatccccacatttt 8710341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 20522202 - 20522157
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||    
T  20522202 aatagtccctacatttcaataaatgtttttaaaatcactacatttt 20522157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 19595702 - 19595650
Alignment:
Q  5 tttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||||| |||||||| ||||||||||||||| ||||||||||||||| |||||    
T  19595702 tttaaagaatagtccctacatttcaataaatatttttaaaatccctatatttt 19595650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 34984590 - 34984544
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  34984590 aatagtccctacatttcaataaatgtttttaaaat-cctacatttttt 34984544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 19579255 - 19579193
Alignment:
Q  5 tttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgtta 67  Q
    |||||| |||||||  | ||||||||||||||||||||||||||||| ||||| | |||||||    
T  19579255 tttaaagaatagtctctgcatttcaataaatgtttttaaaatccctatattttatctctgtta 19579193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 5974055 - 5974100
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||||||| ||||||||| ||||||||||||||||||| |||||||    
T  5974055 aatagtccctacatttcattaaatgtttttaaaatccccacatttt 5974100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 7646028 - 7645956
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgc 84  Q
    ||||||||||||||||||||||||||||| ||||| |  ||||||| | || ||||||| || | ||||||||    
T  7646028 aatagtccttacatttcaataaatgttttaaaaattctcacattttatctccgttatcaaaattagtccctgc 7645956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 8709641 - 8709601
Alignment:
Q  11 aaatagtccttacatttcaataaatgtttttaaaatcccta 51  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  8709641 aaatagtccttacattttaataactgtttttaaaatcccta 8709601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 20521229 - 20521275
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| || ||||||| |||||||||||||||||||||| ||||    
T  20521229 aatagtccctatatttcaaaaaatgtttttaaaatccctacaatttt 20521275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 4510232 - 4510268
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatcc 48  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  4510232 aatagtccctacatttcattaaatgtttttaaaatcc 4510268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 1501027 - 1500911
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtc----ttctgtccagtcaccaaac 107  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||   | |||| || || || |||||||||||    |||  ||||||||||||||    
T  1501027 aatagtccctacatttcattaaatgtttttaaaatccctacatttttctaccgttaacaaaattgatccctgccgtctattttccatccagtcaccaaac 1500928  T
Q  108 agaatggtgatgtggca 124  Q
    |||||| ||||||||||    
T  1500927 agaatgctgatgtggca 1500911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 9122728 - 9122775
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9122728 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 9122775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 47410900 - 47410829
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| || |||| | ||||| |||||||    
T  47410900 aatagtccctacatttcaataaatgtttttaaaatccctacattttttctccgttagcgtaaatagtccctg 47410829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 3591220 - 3591171
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatcccta 51  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3591220 gactttgaaaaatagtccttacatttcaataaatgtttttaaaatcccta 3591171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 30427719 - 30427763
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  30427719 tagtccttacatttcaataaatgtttttaaaatccctacattttt 30427763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 45230175 - 45230219
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  45230175 tagtccttacatttcaataaatgtttttaaaatccctacattttt 45230219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 40124119 - 40124190
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||  || |||| | ||||| |||||||    
T  40124119 aatagtccctacatttcaataaatgtttttaaaatccctacatttttcctccgttagcgtaaatagtccctg 40124190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 46802365 - 46802436
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||  ||||||| | ||||| |||||||    
T  46802365 aatagtccctacatttcaataaaagtttttaaaatccctacatttttcctctgttagcgtaaatagtccctg 46802436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 8997384 - 8997430
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  8997384 aatagtccctacatttcaataaatgtttttaaaatccctacattttt 8997430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 32266526 - 32266572
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  32266526 aatagtccctacatttcaataaatgtttttaaaatccctacattttt 32266572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 47410466 - 47410512
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  47410466 aatagtccctacatttcaataaatgtttttaaaatccctacattttt 47410512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 17968512 - 17968468
Alignment:
Q  14 tagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  17968512 tagtctttacatttcaataaatgtttttaaaatccctacattttt 17968468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 46802801 - 46802753
Alignment:
Q  10 aaaatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  46802801 aaaatagtccctacattttaataaatgtttttaaaatccctacattttt 46802753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 17968080 - 17968127
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  17968080 aatagtccctacatttcaatgaatgtttttaaaatccctacatttttt 17968127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 9123162 - 9123116
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||    
T  9123162 aatagtctctacatttcaataaatgtttttaaaatccctacattttt 9123116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 32266960 - 32266914
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  32266960 aataatccctacatttcaataaatgtttttaaaatccctacattttt 32266914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 40124553 - 40124507
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  40124553 aataatccctacatttcaataaatgtttttaaaatccctacattttt 40124507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 12869708 - 12869663
Alignment:
Q  4 ctttaaaaaatagtccttacatttcaataaatgtttttaaaatccc 49  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||    
T  12869708 ctttaaagaatagtccctacatttcaataaatgtttttaaaatccc 12869663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 19895607 - 19895656
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatcccta 51  Q
    |||||| |||||||||| || |||||||||||||||||||||||||||||    
T  19895607 gactttgaaaaatagtctttgcatttcaataaatgtttttaaaatcccta 19895656  T

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Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 12868469 - 12868521
Alignment:
Q  4 ctttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattt 56  Q
    ||||||| |||||| | ||||||||||||||| ||||||||||||||||||||    
T  12868469 ctttaaagaatagttcctacatttcaataaatatttttaaaatccctacattt 12868521  T

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Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 36793630 - 36793574
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||| || |||||||  ||||||| ||||||||||||||||||||||||||||||    
T  36793630 gactttgaagaatagtctctacattttaataaatgtttttaaaatccctacattttt 36793574  T

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Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 45665995 - 45665947
Alignment:
Q  4 ctttaaaaaatagtccttacatttcaataaatgtttttaaaatccctac 52  Q
    |||||||||||||| ||||| ||||||||||| ||||||||||||||||    
T  45665995 ctttaaaaaatagttcttacgtttcaataaatatttttaaaatccctac 45665947  T

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Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 30428151 - 30428104
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||| | ||||||||||| |||||||||||||||||||||||||||    
T  30428151 aatagttcctacatttcaatgaatgtttttaaaatccctacatttttt 30428104  T

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Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 37717844 - 37717797
Alignment:
Q  10 aaaatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| ||||    
T  37717844 aaaatagtccttacatttcaataaaggtttttaaaatccttacttttt 37717797  T

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Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 45230607 - 45230560
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttttt 59  Q
    |||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  45230607 aatagtccctacatttcaatgaatgtttttaaaatccctatatttttt 45230560  T

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Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 1500096 - 1500149
Alignment:
Q  5 tttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||||| |||||||| ||||||||| | ||||||||||||||||||| ||||||    
T  1500096 tttaaagaatagtccctacatttcattgaatgtttttaaaatccctatattttt 1500149  T

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Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 45664731 - 45664807
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctgccgtc 88  Q
    |||||||  ||||||| ||||||||||||||||||||| ||||||||  || ||||||| |||| ||| || |||||    
T  45664731 aatagtctctacattttaataaatgtttttaaaatccccacatttttactccgttatcaaaaatagtctctaccgtc 45664807  T

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Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 5683375 - 5683413
Alignment:
Q  9 aaaaatagtccttacatttcaataaatgtttttaaaatc 47  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  5683375 aaaaattgtccttgcatttcaataaatgtttttaaaatc 5683413  T

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Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 6751407 - 6751341
Alignment:
Q  4 ctttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatca 70  Q
    ||||||| || ||||||||||||||| ||||| ||||||||||||  ||||||| | | ||||||||    
T  6751407 ctttaaagaaaagtccttacatttcattaaatttttttaaaatcctcacattttatctttgttatca 6751341  T

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Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 18179915 - 18179981
Alignment:
Q  4 ctttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatca 70  Q
    |||| |||||||||||||| |||||| ||| ||||||||||||||  ||||||| | || |||||||    
T  18179915 ctttgaaaaatagtccttatatttcattaattgtttttaaaatcctcacattttatctccgttatca 18179981  T

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Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 31889481 - 31889519
Alignment:
Q  15 agtccttacatttcaataaatgtttttaaaatccctaca 53  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  31889481 agtccctacatttcaataaacgtttttaaaatccctaca 31889519  T

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Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 50359485 - 50359427
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatca 70  Q
    ||||||||||  |||||| ||||||||||||||||||  ||||||| | ||||||||||    
T  50359485 aatagtccttttatttcattaaatgtttttaaaatcctcacattttatctctgttatca 50359427  T

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Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 5172789 - 5172834
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||||||  ||||||||| |||||||||||||||||| ||||||||    
T  5172789 aatagtctctacatttcattaaatgtttttaaaatccttacatttt 5172834  T

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Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 5683197 - 5683250
Alignment:
Q  4 ctttaaaaaatagtccttacatttcaataaatgtttttaaaatccctacatttt 57  Q
    |||| ||||||||||| ||||||||| ||||||| ||||||||||  |||||||    
T  5683197 ctttgaaaaatagtccctacatttcattaaatgtatttaaaatcctcacatttt 5683250  T

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Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 18180086 - 18180131
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaatgtttttaaaatc 47  Q
    |||||| ||||| ||||||| ||||||||||||| |||||||||||    
T  18180086 gactttgaaaaacagtccttgcatttcaataaatatttttaaaatc 18180131  T

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Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 50359323 - 50359290
Alignment:
Q  2 gactttaaaaaatagtccttacatttcaataaat 35  Q
    |||||| |||||||||||||||||||||||||||    
T  50359323 gactttgaaaaatagtccttacatttcaataaat 50359290  T

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Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 48155017 - 48155053
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatcc 48  Q
    |||||||||||||||| | ||||||||||||||||||    
T  48155017 aatagtccttacattttattaaatgtttttaaaatcc 48155053  T

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Target: scaffold0085 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 39898 - 39827
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtccctg 83  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||  || |||| | ||||| |||||||    
T  39898 aatagtccctacatttcaataaatgtttttaaaatccttacatttttcctccgttagcgtaaatagtccctg 39827  T

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Target: scaffold0085; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 39464 - 39510
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttt 58  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  39464 aataatccctacatttcaataaatgtttttaaaatccctacattttt 39510  T

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Target: scaffold0009 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 107936 - 107974
Alignment:
Q  9 aaaaatagtccttacatttcaataaatgtttttaaaatc 47  Q
    |||||||||||||||||||||||||||||||||||||||    
T  107936 aaaaatagtccttacatttcaataaatgtttttaaaatc 107974  T

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Target: scaffold0009; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 107766 - 107834
Alignment:
Q  12 aatagtccttacatttcaataaatgtttttaaaatccctacattttttatctgttatcataaatggtcc 80  Q
    |||||||| ||||||||||||||| ||||||||||||  ||||||| | || ||||||| |||| ||||    
T  107766 aatagtccctacatttcaataaatatttttaaaatcctcacattttatctccgttatcaaaaatagtcc 107834  T

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