View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19848_low_26 (Length: 269)
Name: NF19848_low_26
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19848_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 29858059 - 29857806
Alignment:
| Q |
1 |
ctcacatcgttgcatttgggtaaatggtcctataatagtaggagcaggaccatcaggtctagcaacagcagcatgtcttaagcaacaaggagtacccttc |
100 |
Q |
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| T |
29858059 |
ctcacatcgttgcatttgggtaaatggtcctataatagtaggagcaggaccatcaggtctagcaacagcagcatgtcttaagcaacaaggagtacccttc |
29857960 |
T |
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| Q |
101 |
atggtgcttgaaagagcaaattgcatagcttcactatggcaaaaaagaacatacgacagattaaaacttcacctccctaaacaattctgtcaactaccta |
200 |
Q |
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| T |
29857959 |
atggttcttgaaagatcaaattgcatagcttcactatggcaaaaaagaacatatgacagattaaaacttcacctccctaaacaattctgtcaactaccta |
29857860 |
T |
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| Q |
201 |
actttccattcccacaagaatttcctgaatatccaacaaagaaacagttcataa |
254 |
Q |
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| T |
29857859 |
actttccattcccacaagaatttcctgaatatccaacaaagaaacagttcataa |
29857806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 2136154 - 2136074
Alignment:
| Q |
120 |
attgcatagcttcactatggcaaaaaagaacatacgacagattaaaacttcacctccctaaacaattctgtcaactaccta |
200 |
Q |
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| T |
2136154 |
attgcatagcttcactatggcaaaatagaacctatgaccgtttaaaacttcatttacctaaacatttttgtgaactaccta |
2136074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 17407750 - 17407799
Alignment:
| Q |
164 |
aaacttcacctccctaaacaattctgtcaactacctaactttccattccc |
213 |
Q |
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| T |
17407750 |
aaacttcatcttcctaaacaattgtgtcaactacccaattttccattccc |
17407799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 8 - 254
Target Start/End: Original strand, 39838978 - 39839224
Alignment:
| Q |
8 |
cgttgcatttgggtaaatggtcctataatagtaggagcaggaccatcaggtctagcaacagcagcatgtcttaagcaacaaggagtacccttcatggtgc |
107 |
Q |
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|||||||||||||| ||||| ||| | || |||| ||||| ||||| ||||| ||||| ||||||||||||| ||||||| ||||||||| | || | |
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| T |
39838978 |
cgttgcatttgggtcaatggacctgtgatcataggtgcaggtccatctggtcttgcaacggcagcatgtcttagagaacaaggggtacccttcgttgttc |
39839077 |
T |
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| Q |
108 |
ttgaaagagcaaattgcatagcttcactatggcaaaaaagaacatacgacagattaaaacttcacctccctaaacaattctgtcaactacctaactttcc |
207 |
Q |
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| T |
39839078 |
tcgaaagagctgattgcatagcatcactatggcaaaaaagaacctacgacagattgaaacttcaccttccaaaacaattctgtcaactacctaaccttcc |
39839177 |
T |
|
| Q |
208 |
attcccacaagaatttcctgaatatccaacaaagaaacagttcataa |
254 |
Q |
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| T |
39839178 |
aatgcctgaagatttccctgaatacccttcaaagaaacaattcataa |
39839224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 254
Target Start/End: Original strand, 31290041 - 31290137
Alignment:
| Q |
158 |
agattaaaacttcacctccctaaacaattctgtcaactacctaactttccattcccacaagaatttcctgaatatccaacaaagaaacagttcataa |
254 |
Q |
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| T |
31290041 |
agattcaaacttcaccttcctaaaccattatgtcaactacctaaccttccaatgcttgaagatttccctgaatacccttcaaagaaacagttcataa |
31290137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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