View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19848_low_3 (Length: 527)
Name: NF19848_low_3
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19848_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 17 - 520
Target Start/End: Original strand, 2596100 - 2596603
Alignment:
| Q |
17 |
aacttacacataatggtttcactttgatacctttttcttcttggctcttgaaatttgtagcattgttgaaatcaattgtgatgagtttttcaccagcttc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2596100 |
aacttacacataatggtttcactttgatacctttttcttcttggttgttgaaatttgtagcattgttgaaatcaattgtgatgagtttttcaccagcttc |
2596199 |
T |
|
| Q |
117 |
aattccaagttgaaaagggttactactagaatttgaatcttcatcagcattgtaagctaaaattccaagaattggagaaacaagttgatacttagataga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2596200 |
aattccaagttgaaaagggttactactagaatttgaatcttcatcagcattgtaagctaaaattccaacaattggagaaacaagttgatacttagataga |
2596299 |
T |
|
| Q |
217 |
tcattatagtttgcataatatatagaagaccaattattattatactctatgctttgtcttatcaacattactctttcaatacatggatgaatactaacac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2596300 |
tcattatagtttgcataatatatagaagaccaattattattatactctatgctttgtcttatcaacattactctttcaatacatggatgaatactaacac |
2596399 |
T |
|
| Q |
317 |
caataccaagatgaaactcctttaattttgcaccataccttgttaaacttccacatctaaatctcactgtatctactttgatgcctgataaatttgaagg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2596400 |
caataccaagatgaaactcctttaattttgcaccataccttgttaaacttccacatctaaatctcactgtatctactttgatgcctgataaatttgaagg |
2596499 |
T |
|
| Q |
417 |
tagcttcactgattgtggtattcctgtcttgaagtctttgtctaatgacttgaatgtgtgatctcttatgaggaggtcaagaacatgaactgatttgata |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2596500 |
tagcttcactgattgtggtattcctgtcttgaagtctttgtctaatgacttgaatgtatgatctcttatgaggaggtcaagaacatgaactgatttgata |
2596599 |
T |
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| Q |
517 |
ttct |
520 |
Q |
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|||| |
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| T |
2596600 |
ttct |
2596603 |
T |
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