View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19848_low_30 (Length: 250)
Name: NF19848_low_30
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19848_low_30 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 132 - 250
Target Start/End: Original strand, 11626040 - 11626158
Alignment:
| Q |
132 |
caaatacttagggaagtggaaatgctgaggcattcttaatctctctctctttgggattctcacttcttccggtttctcaaggtgtgttttgtttttggtc |
231 |
Q |
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| T |
11626040 |
caaatacttagtgaagtggaaatgctgagacattcttaatctctctctctttgggattctcacttcttccggtttctcaaggtgtgttttgtttttggtc |
11626139 |
T |
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| Q |
232 |
atcactttttcatgctttt |
250 |
Q |
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| T |
11626140 |
atcactttttcatgctttt |
11626158 |
T |
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Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 11625156 - 11625280
Alignment:
| Q |
9 |
gataattctgattcgaagatgaaaagggtggtgtaataaacagaaataataaaagaaaatgtttgtgagtggattgattcattgactgtatattagaata |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11625156 |
gataattctgattcgaagatgaaaagggtggtgtaataaacagaaata---aaagaaaatgtttgtgagtggattgattcattgactgtatattagaata |
11625252 |
T |
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| Q |
109 |
ttggacgtcattttcactgactacaaat |
136 |
Q |
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| T |
11625253 |
ttggacgtcattttcactgacttcaaat |
11625280 |
T |
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