View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19848_low_35 (Length: 239)
Name: NF19848_low_35
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19848_low_35 |
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| [»] scaffold0102 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 23700728 - 23700948
Alignment:
| Q |
1 |
tcatgaaattgacaaggtccagctgcttttgtaaacacatctgctgtttggttttgtgaagaaacaggtagcaatctcattacaccagcttgtagctttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23700728 |
tcatgaaattgacaaggtccagctgcttttgtaaacacatctgctgtttggttttgtgaagaaacaggtagcaatctcattacaccagcttgtagctttt |
23700827 |
T |
|
| Q |
101 |
cacgaacaagatgacaatcaatgtcaagatgcttggtaagttcatgaaactcaggattggcagagatatgcaatacactttgattatcacagtagagaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23700828 |
cacgaacaagatgacaatcaatgtcaagatgcttggtaagttcatgaaactcaggattggcagagatatgcaatacactttgattatcacagtagagaac |
23700927 |
T |
|
| Q |
201 |
agacaagcgtgacggagcatg |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
23700928 |
agacaagcgtgacggagcatg |
23700948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 194
Target Start/End: Original strand, 23415401 - 23415573
Alignment:
| Q |
22 |
gctgcttttgtaaacacatctgctgtttggttttgtgaagaaacaggtagcaatctcattacaccagcttgtagcttttcacgaacaagatgacaatcaa |
121 |
Q |
| |
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||||||||||| ||||||||||| ||||| || | ||||||| ||||| || ||||||||| || ||||| | || ||||| || | ||||| || | |
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| T |
23415401 |
gctgcttttgtgaacacatctgcagtttgattacgagaagaaataggtaacagtctcattactcctgcttgcactttctcacgtaccaagtgacagtcta |
23415500 |
T |
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| Q |
122 |
tgtcaagatgcttggtaagttcatgaaactcaggattggcagagatatgcaatacactttgattatcacagta |
194 |
Q |
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| T |
23415501 |
tgtccagatgttttgtgcgttcatgaaacacaggattagctgaaatatgcaatgcactctggttatcacagta |
23415573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 194
Target Start/End: Original strand, 31230232 - 31230400
Alignment:
| Q |
26 |
cttttgtaaacacatctgctgtttggttttgtgaagaaacaggtagcaatctcattacaccagcttgtagcttttcacgaacaagatgacaatcaatgtc |
125 |
Q |
| |
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|||| ||||| ||||| || ||||| || |||||||||| || | |||||||| || |||||||||| ||||||||||| | ||||| |||||||| |
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| T |
31230232 |
ctttggtaaagacatcagcagtttgattatgtgaagaaatagacaataatctcataactccagcttgtaatttttcacgaaccaagtgacagtcaatgtc |
31230331 |
T |
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| Q |
126 |
aagatgcttggtaagttcatgaaactcaggattggcagagatatgcaatacactttgattatcacagta |
194 |
Q |
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| T |
31230332 |
aaggtgctttgtgcgttcatgaaacacaggattggccgaaatatgcaaagcactctgattatcacagta |
31230400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 191
Target Start/End: Complemental strand, 20605740 - 20605622
Alignment:
| Q |
73 |
aatctcattacaccagcttgtagcttttcacgaacaagatgacaatcaatgtcaagatgcttggtaagttcatgaaactcaggattggcagagatatgca |
172 |
Q |
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|||||||| ||||||||||| || || ||| ||||||||||||||||||| || ||||| |||||| | ||||||||| ||||||| || || ||||||| |
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| T |
20605740 |
aatctcataacaccagcttgcagtttctcatgaacaagatgacaatcaatatctagatgtttggtacgctcatgaaacacaggattagctgaaatatgca |
20605641 |
T |
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| Q |
173 |
atacactttgattatcaca |
191 |
Q |
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| T |
20605640 |
aagcactttaattgtcaca |
20605622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 197
Target Start/End: Complemental strand, 24509565 - 24509399
Alignment:
| Q |
31 |
gtaaacacatctgctgtttggttttgtgaagaaacaggtagcaatctcattacaccagcttgtagcttttcacgaacaagatgacaatcaatgtcaagat |
130 |
Q |
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|||||||||||||| ||||| || |||||||||| ||||| |||||||| || |||||||| | ||| || || ||||||||||||||||| || |||| |
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| T |
24509565 |
gtaaacacatctgcagtttgattgtgtgaagaaatgggtagtaatctcataactccagcttgcaacttctctcgtacaagatgacaatcaatatctagat |
24509466 |
T |
|
| Q |
131 |
gcttggtaagttcatgaaactcaggattggcagagatatgcaatacactttgattatcacagtagag |
197 |
Q |
| |
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| T |
24509465 |
gtttggtgcgctcatgaaacacagggttagctgatatgtgcaagggactctgattatcacaatagag |
24509399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 20523122 - 20523082
Alignment:
| Q |
82 |
acaccagcttgtagcttttcacgaacaagatgacaatcaat |
122 |
Q |
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| T |
20523122 |
acaccaacttgtatcttttaacgaacaagatgacaatcaat |
20523082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 2272 - 2100
Alignment:
| Q |
22 |
gctgcttttgtaaacacatctgctgtttggttttgtgaagaaacaggtagcaatctcattacaccagcttgtagcttttcacgaacaagatgacaatcaa |
121 |
Q |
| |
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||||||||||| ||||||||||| ||||| || | ||||||| ||||| || ||||||||| || ||||| | || ||||| || | ||||| || | |
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| T |
2272 |
gctgcttttgtgaacacatctgcagtttgattacgagaagaaataggtaacagtctcattactcctgcttgcactttctcacgtaccaagtgacagtcta |
2173 |
T |
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| Q |
122 |
tgtcaagatgcttggtaagttcatgaaactcaggattggcagagatatgcaatacactttgattatcacagta |
194 |
Q |
| |
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|||| ||||| || || ||||||||||| ||||||| || || ||||||||| |||| || ||||||||||| |
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| T |
2172 |
tgtccagatgttttgtgcgttcatgaaacacaggattagctgaaatatgcaatgcactctggttatcacagta |
2100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 6625 - 6453
Alignment:
| Q |
22 |
gctgcttttgtaaacacatctgctgtttggttttgtgaagaaacaggtagcaatctcattacaccagcttgtagcttttcacgaacaagatgacaatcaa |
121 |
Q |
| |
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||||||||||| ||||||||||| ||||| || | ||||||| ||||| || ||||||||| || ||||| | || ||||| || | ||||| || | |
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| T |
6625 |
gctgcttttgtgaacacatctgcagtttgattacgagaagaaataggtaacagtctcattactcctgcttgcactttctcacgtaccaagtgacagtcta |
6526 |
T |
|
| Q |
122 |
tgtcaagatgcttggtaagttcatgaaactcaggattggcagagatatgcaatacactttgattatcacagta |
194 |
Q |
| |
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|||| ||||| || || ||||||||||| ||||||| || || ||||||||| |||| || ||||||||||| |
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| T |
6525 |
tgtccagatgttttgtgcgttcatgaaacacaggattagctgaaatatgcaatgcactctggttatcacagta |
6453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 202
Target Start/End: Complemental strand, 22845255 - 22845138
Alignment:
| Q |
85 |
ccagcttgtagcttttcacgaacaagatgacaatcaatgtcaagatgcttggtaagttcatgaaactcaggattggcagagatatgcaatacactttgat |
184 |
Q |
| |
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|||||||| | ||||||||| || ||||||||||||||||| | |||||||| ||||||||||| | ||||| || || || || | | |||| || | |
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| T |
22845255 |
ccagcttgaatcttttcacgtactagatgacaatcaatgtctaagtgcttggtgcgttcatgaaacactggattagctgatatgtgaagtgcactctggt |
22845156 |
T |
|
| Q |
185 |
tatcacagtagagaacag |
202 |
Q |
| |
|
||||||||||||| |||| |
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|
| T |
22845155 |
tatcacagtagagtacag |
22845138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 202
Target Start/End: Complemental strand, 14236759 - 14236644
Alignment:
| Q |
87 |
agcttgtagcttttcacgaacaagatgacaatcaatgtcaagatgcttggtaagttcatgaaactcaggattggcagagatatgcaatacactttgatta |
186 |
Q |
| |
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|||||| | ||||||||| || ||||||||||||||||| | |||||||| ||||||||||| | ||||| || || || || | | |||| || ||| |
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| T |
14236759 |
agcttgaatcttttcacgtactagatgacaatcaatgtctaagtgcttggtgcgttcatgaaacactggattagctgatatgtgaagtgcactctggtta |
14236660 |
T |
|
| Q |
187 |
tcacagtagagaacag |
202 |
Q |
| |
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||||||||||| |||| |
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|
| T |
14236659 |
tcacagtagagtacag |
14236644 |
T |
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