View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19848_low_37 (Length: 207)
Name: NF19848_low_37
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19848_low_37 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 2928583 - 2928431
Alignment:
| Q |
17 |
atactacgaaaaacgcaatagaacagctccaatacacaaatctaagaaactgaaaaactgccgaaacagtacaccagagattgacagacta---gttgat |
113 |
Q |
| |
|
|||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
2928583 |
atactaagaaaaacaaaatagaacaactccaatacacaaatctaagaaactgaaaaaccgcccaaacagtacaccagagattgacagactagttgttgaa |
2928484 |
T |
|
| Q |
114 |
acaaccctgcaatcagcaatcatactagaatcaccatggacctttagaattttctgagc |
172 |
Q |
| |
|
||| ||| | ||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
2928483 |
acagccc------ctgcaatcatacttgaatcaccatggaccttttgaattttctgagc |
2928431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 3002725 - 3002773
Alignment:
| Q |
17 |
atactacgaaaaacgcaatagaacagctccaatacacaaatctaagaaa |
65 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3002725 |
atactaagaaaaacgcaatagaacagctccaatacacaaatataagaaa |
3002773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 37200252 - 37200292
Alignment:
| Q |
32 |
caatagaacagctccaatacacaaatctaagaaactgaaaa |
72 |
Q |
| |
|
||||||| |||| |||||||||||| ||||||||||||||| |
|
|
| T |
37200252 |
caatagagcagccccaatacacaaaactaagaaactgaaaa |
37200292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University