View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19848_low_5 (Length: 477)
Name: NF19848_low_5
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19848_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 333
Target Start/End: Original strand, 4821931 - 4822248
Alignment:
| Q |
16 |
gaagaaaaagaagctttgcagcctgcaatcagcaccaccattgtattatccaatacttccatcgtcgcgacccccgccatcggcagctgcttgtgcccct |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4821931 |
gaagaaaatgaagctttgcagcctgcaatcagcaccaccattgtattatccaatacttccatcgtcgcgacccccgccatcggcagctgcttgtgcccct |
4822030 |
T |
|
| Q |
116 |
gccaggaccaccttcaaaagctgcagctgccttacatgccccnnnnnnnttgcatcatctcaatctcaagtcacaacctacatatccaacaccaatgcgt |
215 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4822031 |
tccaggaccaccttcaaaagcagcagctgccttacatgccccaaaaaaattgcatcatctcaatctcaagtcacaacctacatatccaacacctatgcgt |
4822130 |
T |
|
| Q |
216 |
gctttgcggaacaattggtagtcccacatcgaaagcttttgatcttatagaggtcaactatattataaataaacacgcacagctattgagcggaaagtaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4822131 |
gctttgcggaacaattggtagtcccacatcgaaagcttttgatcttatagaggtcaactatattataaataaacacgcacagctattgagcggatagtaa |
4822230 |
T |
|
| Q |
316 |
ccggagcactctttggag |
333 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
4822231 |
ctggagcactctttggag |
4822248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 330 - 466
Target Start/End: Original strand, 4823257 - 4823396
Alignment:
| Q |
330 |
ggaggtagtacaataaaacccattccatctcataccatccaatccttcaattttccattcactcacaagttacaag---ttattcactataagctcaaaa |
426 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4823257 |
ggaggtagtacaataaaacccattccacctcataccatctaatccttcaattttccattcactcacaagttacaagttattattcactataagctcaaaa |
4823356 |
T |
|
| Q |
427 |
gttgatctatccaaaagaagagttttagtgtgtaaattga |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4823357 |
tttgatctatccaaaagaagagttttagtgtgtaaattga |
4823396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 4811949 - 4812010
Alignment:
| Q |
16 |
gaagaaaaagaagctttgcagcctgcaatcagcaccaccattgtattatccaatacttccat |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4811949 |
gaagaaaaagaagctttgcagcctgcaatcagcaccaccattgtattatccaatacttccat |
4812010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 396 - 465
Target Start/End: Original strand, 4813502 - 4813571
Alignment:
| Q |
396 |
aagttacaagttattcactataagctcaaaagttgatctatccaaaagaagagttttagtgtgtaaattg |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4813502 |
aagttacaagttattcactataagctcaaatgtcgatctatccaaaagaagagttttagtgtgtaaattg |
4813571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 235 - 333
Target Start/End: Original strand, 4812065 - 4812164
Alignment:
| Q |
235 |
agtcccacatcgaaagcttttga-tcttatagaggtcaactatattataaataaacacgcacagctattgagcggaaagtaaccggagcactctttggag |
333 |
Q |
| |
|
|||||||||| | |||||||||| |||| ||||||||||||||||||||||||||| | |||| |||||||| ||| ||||| |||||||||||||||| |
|
|
| T |
4812065 |
agtcccacattggaagcttttgaatcttgtagaggtcaactatattataaataaacgcacacaactattgagaggattgtaactggagcactctttggag |
4812164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 335 - 408
Target Start/End: Original strand, 4813412 - 4813485
Alignment:
| Q |
335 |
tagtacaataaaacccattccatctcataccatccaatccttcaattttccattcactcacaagttacaagtta |
408 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| |||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
4813412 |
tagtacaataaaactcattccatcctataccatccagtccttcaattttccatccactccaaagttacaagtta |
4813485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 4800531 - 4800595
Alignment:
| Q |
224 |
gaacaattggtagtcccacatcgaaagcttttg-atcttatagaggtcaactatattataaataa |
287 |
Q |
| |
|
||||||||| |||||||||||| |||||||||| | ||||||||||| |||| |||||||||||| |
|
|
| T |
4800531 |
gaacaattgatagtcccacatccaaagcttttgaaacttatagaggtaaactttattataaataa |
4800595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 4815333 - 4815397
Alignment:
| Q |
224 |
gaacaattggtagtcccacatcgaaagcttttgat-cttatagaggtcaactatattataaataa |
287 |
Q |
| |
|
||||||| |||||| |||||||| |||||||||| || |||||||| ||||| ||||||||||| |
|
|
| T |
4815333 |
gaacaatcggtagttccacatcggaagcttttgaagctcatagaggtaaactaaattataaataa |
4815397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University