View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19848_low_6 (Length: 474)

Name: NF19848_low_6
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19848_low_6
NF19848_low_6
[»] chr1 (15 HSPs)
chr1 (39-455)||(47831893-47832306)
chr1 (82-284)||(2539186-2539389)
chr1 (162-433)||(47827322-47827594)
chr1 (294-420)||(2537554-2537682)
chr1 (219-430)||(47834304-47834509)
chr1 (372-420)||(52909503-52909551)
chr1 (373-410)||(22224528-22224565)
chr1 (374-412)||(14434191-14434229)
chr1 (374-420)||(40608982-40609028)
chr1 (375-412)||(18507576-18507613)
chr1 (372-429)||(38815978-38816035)
chr1 (39-72)||(47827222-47827255)
chr1 (373-405)||(18041675-18041707)
chr1 (372-412)||(23348079-23348119)
chr1 (372-404)||(23353339-23353371)
[»] chr8 (9 HSPs)
chr8 (129-335)||(16778538-16778742)
chr8 (185-406)||(4330065-4330289)
chr8 (372-420)||(43933666-43933714)
chr8 (39-80)||(16778435-16778476)
chr8 (373-410)||(24118978-24119015)
chr8 (376-406)||(11783958-11783988)
chr8 (373-410)||(34240884-34240921)
chr8 (372-412)||(10648890-10648930)
chr8 (348-424)||(16778741-16778817)
[»] chr4 (7 HSPs)
chr4 (375-420)||(20959998-20960043)
chr4 (372-420)||(26413996-26414044)
chr4 (373-406)||(12195724-12195757)
chr4 (375-420)||(35297971-35298016)
chr4 (373-405)||(1676824-1676856)
chr4 (373-405)||(1683352-1683384)
chr4 (374-406)||(43854626-43854658)
[»] chr6 (5 HSPs)
chr6 (373-420)||(9871667-9871714)
chr6 (372-410)||(8338227-8338265)
chr6 (186-233)||(31253216-31253263)
chr6 (372-410)||(4282822-4282860)
chr6 (373-410)||(23107769-23107806)
[»] chr7 (6 HSPs)
chr7 (300-417)||(3230101-3230220)
chr7 (373-410)||(4157742-4157779)
chr7 (374-410)||(10301950-10301986)
chr7 (372-422)||(2650739-2650789)
chr7 (372-430)||(2724650-2724708)
chr7 (186-240)||(3230001-3230055)
[»] chr2 (3 HSPs)
chr2 (373-412)||(28699683-28699722)
chr2 (374-406)||(13515921-13515953)
chr2 (375-407)||(31510664-31510696)
[»] chr3 (6 HSPs)
chr3 (373-407)||(14753805-14753839)
chr3 (359-428)||(52011999-52012068)
chr3 (372-420)||(40458128-40458176)
chr3 (373-420)||(30554169-30554216)
chr3 (372-413)||(34919781-34919822)
chr3 (375-420)||(41301764-41301809)
[»] chr5 (2 HSPs)
chr5 (376-407)||(41654017-41654048)
chr5 (374-407)||(19049715-19049748)
[»] scaffold0024 (1 HSPs)
scaffold0024 (374-412)||(121080-121118)


Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 39 - 455
Target Start/End: Original strand, 47831893 - 47832306
Alignment:
Q  39 tggtaaggggacctagtgatattcatgtttggtaaatattgactgagtttgaaattgtgtctagtaattctataactacaccattgtcaacacattacaa 138  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  47831893 tggtaaggggacctagtgatattcatgcttggtaaatattgattgagtttggaattgtgtctagtaattctataactacgccattgtcaacacattacaa 47831992  T
Q  139 agttggggtaagttttcattcaaccccaatcaacctttttataggcatggaccgccaatattatattaagggcttgtcgtccctcaataaaggcttgccg 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47831993 agttggggtaagttttcattcaaccccaatcaacctttttataggcatggaccgccaatattatattaagggcttgtcgtccctcaataaaggcttgccg 47832092  T
Q  239 acccttcggggagcacatttggccttagaaggcgtaaaccacctttaccggcttctagaaacttctagaacgcttgtctgctatcttggggcctaagtta 338  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  47832093 acccttcggggagcacatttggccttagagggc-taaaccacctttcccggcttctagaaacttctagaacgcctgcctgctatcttggggcctaagtta 47832191  T
Q  339 cttaggggcagacacgaagatataagttcaaataggctataaatacccctcttgagagcattctcaaggcatgatctaaacatatattaaactctgagtt 438  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||    
T  47832192 cttaggggcagacacgaagatataagttcaaataggctataa--acccctcttgagaacattatcaaggcatgacctaaatatatattaaactctgagtt 47832289  T
Q  439 gtgatccaactgcgttc 455  Q
    |||||||||||||||||    
T  47832290 gtgatccaactgcgttc 47832306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 82 - 284
Target Start/End: Complemental strand, 2539389 - 2539186
Alignment:
Q  82 tgagtttgaaattgtgtctagtaattctataactacac-cattgtcaacacattacaaagttggggtaagttttcattcaaccccaatcaacctttttat 180  Q
    ||||||||||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  2539389 tgagtttgaaactgtgtctagtagttctataactaccctcattgtcaacacattacaaagttggggtgagttttcattcaaccccaatcaacccttttat 2539290  T
Q  181 aggcatggaccgccaatattatattaagggcttgtcgtccctcaataaaggcttgccgacccttcggggagcacatttggccttagaaggcgtaaaccac 280  Q
    |   ||||| | |||||||||||||||||||||||||||||||||||||||||| | | ||||||| ||||| | ||||||| |||||||||||||||||    
T  2539289 aaatatggatcaccaatattatattaagggcttgtcgtccctcaataaaggctttcgggcccttcgaggagcgcctttggccgtagaaggcgtaaaccac 2539190  T
Q  281 cttt 284  Q
    ||||    
T  2539189 cttt 2539186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 162 - 433
Target Start/End: Original strand, 47827322 - 47827594
Alignment:
Q  162 ccccaatcaacctttttataggcatggaccgccaatattatattaagggcttgtcgtccctcaataaaggcttgccgacccttcggggagcacatttggc 261  Q
    |||||||| ||| |||||||  ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||    
T  47827322 ccccaatcgacccttttataaacatggaccgtcgatattatattaagggcttgtcgtccctcaataaaggcttgccgacccttcgggg-gcgcctttggc 47827420  T
Q  262 cttagaaggcgtaaaccacctttaccggcttctagaaacttctagaacgcttgtctgctatcttggggcctaagttacttaggggc--agacacgaagat 359  Q
    ||||||||||| ||||  ||||| || |||| ||||||||||||||||||| | ||||||| |||| ||| |||| | |||||| |  |||||  || ||    
T  47827421 cttagaaggcgaaaacttcctttcccagcttttagaaacttctagaacgctcgcctgctattttggagccgaagtcaattagggcccaagacattaaaat 47827520  T
Q  360 ataagttcaaataggctataaatacccctcttgagagcattctcaaggcatgatctaaacatatattaaactct 433  Q
    |||||  ||||||| ||||||||| |||||||||||||||| ||||||||||| ||||||| ||||||||||||    
T  47827521 ataagcccaaatagactataaatatccctcttgagagcattatcaaggcatgacctaaacagatattaaactct 47827594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 294 - 420
Target Start/End: Complemental strand, 2537682 - 2537554
Alignment:
Q  294 tagaaacttctagaacgcttgtctgctatcttggggcctaagttacttaggggc--agacacgaagatataagttcaaataggctataaatacccctctt 391  Q
    ||||||||||||||||||| |  |||||||||||||||||| |||| ||||| |  ||| | ||| ||||||| ||||  |||||||| |||||||||||    
T  2537682 tagaaacttctagaacgctcgcttgctatcttggggcctaacttacatagggaccaagaaatgaaaatataagctcaaggaggctatagatacccctctt 2537583  T
Q  392 gagagcattctcaaggcatgatctaaaca 420  Q
    |||||||||||||||||||||||||||||    
T  2537582 gagagcattctcaaggcatgatctaaaca 2537554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 219 - 430
Target Start/End: Original strand, 47834304 - 47834509
Alignment:
Q  219 ccctcaataaaggcttgccgacccttcggggagcacatttggccttagaaggcgtaaaccacctttaccggcttctagaaacttctagaacgcttgtctg 318  Q
    |||||||||| |||||| ||||||||||||| ||||  |||||||||||||||||||||| ||||| ||          | |||||||||| ||||||||    
T  47834304 ccctcaataatggcttgtcgacccttcggggcgcacgcttggccttagaaggcgtaaaccgccttttcc----------agcttctagaacacttgtctg 47834393  T
Q  319 ctatcttggggcctaagttacttaggggc--agacacgaagatataagttcaaataggct---ataaatacccctcttgagagcattctcaaggcatgat 413  Q
    || ||||||||||||||||||| | ||||  || ||| || |||||||  |||||| | |   |||||||||||| |||||| |||| |||||||||||     
T  47834394 ctgtcttggggcctaagttactcaagggccaagccacaaaaatataagcccaaatatgttgtaataaatacccct-ttgagatcattttcaaggcatgac 47834492  T
Q  414 ctaaacatatattaaac 430  Q
    ||||||| |||||||||    
T  47834493 ctaaacaaatattaaac 47834509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 420
Target Start/End: Complemental strand, 52909551 - 52909503
Alignment:
Q  372 aggctataaatacccctcttgagagcattctcaaggcatgatctaaaca 420  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  52909551 aggctataaatacccctcttgagagcattctcaaggcatgacctaaaca 52909503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 410
Target Start/End: Complemental strand, 22224565 - 22224528
Alignment:
Q  373 ggctataaatacccctcttgagagcattctcaaggcat 410  Q
    |||||||||||| |||||||||||||||||||||||||    
T  22224565 ggctataaatacacctcttgagagcattctcaaggcat 22224528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 412
Target Start/End: Complemental strand, 14434229 - 14434191
Alignment:
Q  374 gctataaatacccctcttgagagcattctcaaggcatga 412  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  14434229 gctataaatacccatcttaagagcattctcaaggcatga 14434191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 420
Target Start/End: Original strand, 40608982 - 40609028
Alignment:
Q  374 gctataaatacccctcttgagagcattctcaaggcatgatctaaaca 420  Q
    |||||||||||||||||||||| |||||||||  ||||| |||||||    
T  40608982 gctataaatacccctcttgagaacattctcaaaccatgacctaaaca 40609028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 412
Target Start/End: Complemental strand, 18507613 - 18507576
Alignment:
Q  375 ctataaatacccctcttgagagcattctcaaggcatga 412  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  18507613 ctataaatacccttcttgagagctttctcaaggcatga 18507576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 429
Target Start/End: Complemental strand, 38816035 - 38815978
Alignment:
Q  372 aggctataaatacccctcttgagagcattctcaaggcatgatctaaacatatattaaa 429  Q
    |||||||||||| ||| ||||||| |||| |||||||||||  |||||||||| ||||    
T  38816035 aggctataaatatcccacttgagaccattatcaaggcatgacttaaacatatactaaa 38815978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 47827222 - 47827255
Alignment:
Q  39 tggtaaggggacctagtgatattcatgtttggta 72  Q
    ||||||||||||||||||||||||||| ||||||    
T  47827222 tggtaaggggacctagtgatattcatgcttggta 47827255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 405
Target Start/End: Original strand, 18041675 - 18041707
Alignment:
Q  373 ggctataaatacccctcttgagagcattctcaa 405  Q
    |||||||||||||| ||||||||||||||||||    
T  18041675 ggctataaatacccttcttgagagcattctcaa 18041707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 23348079 - 23348119
Alignment:
Q  372 aggctataaatacccctcttgagagcattctcaaggcatga 412  Q
    |||||||||||||||||||||||| | |||||| |||||||    
T  23348079 aggctataaatacccctcttgagatcgttctcagggcatga 23348119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 404
Target Start/End: Original strand, 23353339 - 23353371
Alignment:
Q  372 aggctataaatacccctcttgagagcattctca 404  Q
    |||||||||||||||||||||||| ||||||||    
T  23353339 aggctataaatacccctcttgagatcattctca 23353371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 129 - 335
Target Start/End: Original strand, 16778538 - 16778742
Alignment:
Q  129 cacattacaaagttggggtaagttttcattcaaccccaatcaacctttttataggcatggaccgccaatattatattaagggcttgtcgtccctcaataa 228  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |  ||||||||| | |||||    
T  16778538 cacattaaaaagttggggtgagttttcattcaaccccaatcaacctttttataggcatggaccaccaatattatatta--gatttgtcgtccttaaataa 16778635  T
Q  229 aggcttgccgacccttcggggagcacatttggccttagaaggcgtaaaccacctttaccggcttctagaaacttctagaacgcttgtctgctatcttggg 328  Q
    ||||||| |||||||||||||||| | |||||||||| |||| ||||||||||||| || |||||||||||||||||||| || || |||||||||  ||    
T  16778636 aggcttgtcgacccttcggggagcgcctttggccttataaggtgtaaaccacctttcccagcttctagaaacttctagaatgcctgcctgctatctctgg 16778735  T
Q  329 gcctaag 335  Q
    |||||||    
T  16778736 gcctaag 16778742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 185 - 406
Target Start/End: Original strand, 4330065 - 4330289
Alignment:
Q  185 atggaccgccaatattatattaagggcttgtcgtccctcaataaaggcttgccgacccttcggggagcacatttggccttagaaggcgtaaaccaccttt 284  Q
    ||||||| |||||| ||||||||||||||| | ||||||||||||||||||| |||||||| |||| | | |||||  |||||||| ||||| | |||||    
T  4330065 atggacctccaataatatattaagggcttgccatccctcaataaaggcttgctgacccttcagggaccgcctttggtattagaaggtgtaaatcgccttt 4330164  T
Q  285 accggcttctagaaacttctagaacgcttgtctgctatcttggggcctaagttacttaggggc--agacacgaagatataagttc-aaataggctataaa 381  Q
     || | |||||||||||||||||||||    ||||| |||||||| ||||||||||||||| |  | |||| || |||||||  | ||| ||||||||||    
T  4330165 cccagattctagaaacttctagaacgcgcacctgctgtcttggggtctaagttacttagggcccaatacacaaaaatataagcccaaaagaggctataaa 4330264  T
Q  382 tacccctcttgagagcattctcaag 406  Q
    ||| | |||||||||||||||||||    
T  4330265 tactcttcttgagagcattctcaag 4330289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 43933666 - 43933714
Alignment:
Q  372 aggctataaatacccctcttgagagcattctcaaggcatgatctaaaca 420  Q
    |||||||||||||||  |||||||||||||||||||||||| |||||||    
T  43933666 aggctataaatacccaccttgagagcattctcaaggcatgacctaaaca 43933714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 16778435 - 16778476
Alignment:
Q  39 tggtaaggggacctagtgatattcatgtttggtaaatattga 80  Q
    |||||||||||| |||||||||||||| ||||||||||||||    
T  16778435 tggtaaggggacttagtgatattcatgcttggtaaatattga 16778476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 410
Target Start/End: Original strand, 24118978 - 24119015
Alignment:
Q  373 ggctataaatacccctcttgagagcattctcaaggcat 410  Q
    |||||||||||| |||||||||||||||||||||||||    
T  24118978 ggctataaatacacctcttgagagcattctcaaggcat 24119015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 406
Target Start/End: Complemental strand, 11783988 - 11783958
Alignment:
Q  376 tataaatacccctcttgagagcattctcaag 406  Q
    |||||||||||||||||||||||||||||||    
T  11783988 tataaatacccctcttgagagcattctcaag 11783958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 410
Target Start/End: Original strand, 34240884 - 34240921
Alignment:
Q  373 ggctataaatacccctcttgagagcattctcaaggcat 410  Q
    |||||||||||||||||||| || ||||||||||||||    
T  34240884 ggctataaatacccctcttgggatcattctcaaggcat 34240921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 10648890 - 10648930
Alignment:
Q  372 aggctataaatacccctcttgagagcattctcaaggcatga 412  Q
    ||||||||||||||||| || |||||||||||| |||||||    
T  10648890 aggctataaataccccttttcagagcattctcagggcatga 10648930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 16778741 - 16778817
Alignment:
Q  348 agacacgaagatataagttcaaataggctataaatacccctcttgagagcattctcaaggcatgatctaaacatata 424  Q
    ||||||||| |||||||| |||| |||||||||||||||   ||  ||||||||| ||| | ||| |||||||||||    
T  16778741 agacacgaaaatataagtccaaagaggctataaataccctcatttcgagcattctaaagacgtgacctaaacatata 16778817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 420
Target Start/End: Complemental strand, 20960043 - 20959998
Alignment:
Q  375 ctataaatacccctcttgagagcattctcaaggcatgatctaaaca 420  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  20960043 ctataaatacccctcttgagagcattctcaaggcatgacctaaaca 20959998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 372 - 420
Target Start/End: Complemental strand, 26414044 - 26413996
Alignment:
Q  372 aggctataaatacccctcttgagagcattctcaaggcatgatctaaaca 420  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||    
T  26414044 aggctacaaatacccctcttgagagcattctcaaggcatgacctaaaca 26413996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 406
Target Start/End: Original strand, 12195724 - 12195757
Alignment:
Q  373 ggctataaatacccctcttgagagcattctcaag 406  Q
    |||||||||||| |||||||||||||||||||||    
T  12195724 ggctataaatacacctcttgagagcattctcaag 12195757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 420
Target Start/End: Original strand, 35297971 - 35298016
Alignment:
Q  375 ctataaatacccctcttgagagcattctcaaggcatgatctaaaca 420  Q
    ||||||||||||  |||||||||||||| ||||||||| |||||||    
T  35297971 ctataaataccctccttgagagcattcttaaggcatgacctaaaca 35298016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 405
Target Start/End: Original strand, 1676824 - 1676856
Alignment:
Q  373 ggctataaatacccctcttgagagcattctcaa 405  Q
    ||||||||||||||||||| |||||||||||||    
T  1676824 ggctataaatacccctcttaagagcattctcaa 1676856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 405
Target Start/End: Original strand, 1683352 - 1683384
Alignment:
Q  373 ggctataaatacccctcttgagagcattctcaa 405  Q
    ||||||||||||||||||| |||||||||||||    
T  1683352 ggctataaatacccctcttaagagcattctcaa 1683384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 43854658 - 43854626
Alignment:
Q  374 gctataaatacccctcttgagagcattctcaag 406  Q
    |||||||||||||||||| ||||||||||||||    
T  43854658 gctataaatacccctcttaagagcattctcaag 43854626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 420
Target Start/End: Complemental strand, 9871714 - 9871667
Alignment:
Q  373 ggctataaatacccctcttgagagcattctcaaggcatgatctaaaca 420  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||    
T  9871714 ggctataaatacccctcttgagagtattctcaaggcatgacctaaaca 9871667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 410
Target Start/End: Complemental strand, 8338265 - 8338227
Alignment:
Q  372 aggctataaatacccctcttgagagcattctcaaggcat 410  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  8338265 aggctataaatacccctcttgagaacattctcaaggcat 8338227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 31253216 - 31253263
Alignment:
Q  186 tggaccgccaatattatattaagggcttgtcgtccctcaataaaggct 233  Q
    |||||| |||||||||||||||||||||||   |||||||||||||||    
T  31253216 tggaccaccaatattatattaagggcttgttagccctcaataaaggct 31253263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 410
Target Start/End: Complemental strand, 4282860 - 4282822
Alignment:
Q  372 aggctataaatacccctcttgagagcattctcaaggcat 410  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  4282860 aggctataaataaccctcttgagatcattctcaaggcat 4282822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 410
Target Start/End: Original strand, 23107769 - 23107806
Alignment:
Q  373 ggctataaatacccctcttgagagcattctcaaggcat 410  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  23107769 ggctataaatacccctcttgagagctttctcaatgcat 23107806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 417
Target Start/End: Original strand, 3230101 - 3230220
Alignment:
Q  300 cttctagaacgcttgtctgctatcttggggcctaagttacttaggggc--agacacgaagatataagttcaaataggctataaatacccctcttgagagc 397  Q
    |||||||||| || | ||||| |||||| | |||||||||||  || |  ||||||||| ||||||| ||||| || |  |||||  |||||||||||||    
T  3230101 cttctagaacactcgcctgctgtcttggagtctaagttacttgtggtctaagacacgaaaatataagctcaaagagacggtaaatgtccctcttgagagc 3230200  T
Q  398 attctcaaggcatgatctaa 417  Q
    ||||||| ||||||||||||    
T  3230201 attctcatggcatgatctaa 3230220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 410
Target Start/End: Complemental strand, 4157779 - 4157742
Alignment:
Q  373 ggctataaatacccctcttgagagcattctcaaggcat 410  Q
    |||||||||||| |||||||||||||||||||||||||    
T  4157779 ggctataaatacacctcttgagagcattctcaaggcat 4157742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 410
Target Start/End: Complemental strand, 10301986 - 10301950
Alignment:
Q  374 gctataaatacccctcttgagagcattctcaaggcat 410  Q
    ||||||||||| |||||||||||||||||||||||||    
T  10301986 gctataaatacacctcttgagagcattctcaaggcat 10301950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 422
Target Start/End: Complemental strand, 2650789 - 2650739
Alignment:
Q  372 aggctataaatacccctcttgagagcattctcaaggcatgatctaaacata 422  Q
    |||||||||||||||  ||||||| ||||||||||| |||| |||||||||    
T  2650789 aggctataaatacccaccttgagatcattctcaaggaatgacctaaacata 2650739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 2724650 - 2724708
Alignment:
Q  372 aggctataaatacccctcttgagagcattctcaaggcatgatctaaacatatattaaac 430  Q
    |||||||||||||| |  ||||| ||||||||||||||||| ||||||| ||| |||||    
T  2724650 aggctataaataccacctttgagtgcattctcaaggcatgacctaaacagatactaaac 2724708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 3230001 - 3230055
Alignment:
Q  186 tggaccgccaatattatattaagggcttgtcgtccctcaataaaggcttgccgac 240  Q
    ||||||||| |||||||||||| ||||||    ||||||||||||||||||||||    
T  3230001 tggaccgccgatattatattaaaggcttgcgagccctcaataaaggcttgccgac 3230055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 373 - 412
Target Start/End: Complemental strand, 28699722 - 28699683
Alignment:
Q  373 ggctataaatacccctcttgagagcattctcaaggcatga 412  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  28699722 ggctataaatacccctcttgagatcattctcaaggcatga 28699683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 13515953 - 13515921
Alignment:
Q  374 gctataaatacccctcttgagagcattctcaag 406  Q
    |||||||||||||||||||||| ||||||||||    
T  13515953 gctataaatacccctcttgagatcattctcaag 13515921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 407
Target Start/End: Complemental strand, 31510696 - 31510664
Alignment:
Q  375 ctataaatacccctcttgagagcattctcaagg 407  Q
    |||||||||| ||||||||||||||||||||||    
T  31510696 ctataaatacacctcttgagagcattctcaagg 31510664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 407
Target Start/End: Original strand, 14753805 - 14753839
Alignment:
Q  373 ggctataaatacccctcttgagagcattctcaagg 407  Q
    |||||||||||||||||||||||||||||||||||    
T  14753805 ggctataaatacccctcttgagagcattctcaagg 14753839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 428
Target Start/End: Complemental strand, 52012068 - 52011999
Alignment:
Q  359 tataagttcaaataggctataaatacccctcttgagagcattctcaaggcatgatctaaacatatattaa 428  Q
    |||||| |||||  |||||||||||| |  ||||||| |||||||||||||||| ||||||| |||||||    
T  52012068 tataagctcaaaatggctataaatactcaccttgagatcattctcaaggcatgacctaaacaaatattaa 52011999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 40458128 - 40458176
Alignment:
Q  372 aggctataaatacccctcttgagagcattctcaaggcatgatctaaaca 420  Q
    |||||||||||||||  ||||||| |||||||||||||||| |||||||    
T  40458128 aggctataaatacccaccttgagatcattctcaaggcatgacctaaaca 40458176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 420
Target Start/End: Original strand, 30554169 - 30554216
Alignment:
Q  373 ggctataaatacccctcttgagagcattctcaaggcatgatctaaaca 420  Q
    ||||||||||||||||||| |||| ||||||||||||| | |||||||    
T  30554169 ggctataaatacccctctttagagtattctcaaggcatcacctaaaca 30554216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 413
Target Start/End: Complemental strand, 34919822 - 34919781
Alignment:
Q  372 aggctataaatacccctcttgagagcattctcaaggcatgat 413  Q
    |||||||||||||||  |||||||| ||||||||||||||||    
T  34919822 aggctataaatacccaccttgagagaattctcaaggcatgat 34919781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 420
Target Start/End: Complemental strand, 41301809 - 41301764
Alignment:
Q  375 ctataaatacccctcttgagagcattctcaaggcatgatctaaaca 420  Q
    ||||||||||||||||||||| |||||||| | ||||| |||||||    
T  41301809 ctataaatacccctcttgagatcattctcatgacatgacctaaaca 41301764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 407
Target Start/End: Original strand, 41654017 - 41654048
Alignment:
Q  376 tataaatacccctcttgagagcattctcaagg 407  Q
    ||||||||||||||||||||||||||||||||    
T  41654017 tataaatacccctcttgagagcattctcaagg 41654048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 407
Target Start/End: Complemental strand, 19049748 - 19049715
Alignment:
Q  374 gctataaatacccctcttgagagcattctcaagg 407  Q
    |||||||||||| |||||||||||||||||||||    
T  19049748 gctataaataccactcttgagagcattctcaagg 19049715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 412
Target Start/End: Original strand, 121080 - 121118
Alignment:
Q  374 gctataaatacccctcttgagagcattctcaaggcatga 412  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  121080 gctataaatacccctcatgagatcattctcaaggcatga 121118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University