View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19848_low_9 (Length: 444)
Name: NF19848_low_9
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19848_low_9 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 34931228 - 34931651
Alignment:
| Q |
1 |
tattcatgggaattggagagggcgttcaatcaaacttataacttctgaaagggaggtggctttctgatcaaagttgcttgctcaaatgaataagcaattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34931228 |
tattcatgggaattggagagggcgttcaatcaaacttataacttccgaaagggaggtggctttctgatcaaagttgcttgctcaaatgaataagcaattt |
34931327 |
T |
|
| Q |
101 |
caatcaactttggctctgaccctttcaaacctccaaagaaaattccaaatggctgacccttttcatatcctgctggaacactcagtccaggataacctcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34931328 |
caatcaactttggctctgaccctttcaaacctccaaagaaaattccaaatggctgacccttttcatatcctgctggaacactcagtccaggataacctcc |
34931427 |
T |
|
| Q |
201 |
aatagcaagtatatggctaaaggaccaaataggtgttactacagcatcaagtttatttcttttcatcagtttctcaaacccattttgtgaccatcttgtc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34931428 |
aatagcaagtatatggctaaaggaccaaataggtgttactacagcatcaagtttatttcttttcatcagtttctcaaacccattttgtgaccatcttgtc |
34931527 |
T |
|
| Q |
301 |
atgtttaataatgcttgtttttctgctttaccaattccatttgtcttttcagcttgcaccataacatcttggccatactcaagtttctcctacaatgttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
34931528 |
atgtttaataatgcttgtttttctgctttaccaattccatttgtcttttcagcttgcaccatgacatcttggccatacccaagtttctcctacaatgttt |
34931627 |
T |
|
| Q |
401 |
atacaacaattaagatgctatcgt |
424 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
34931628 |
gtacaacaattaagatgctatcgt |
34931651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 34926322 - 34926744
Alignment:
| Q |
1 |
tattcatgggaattggagagggcgttcaatcaaacttataacttctgaaagggaggtggctttctgatcaaagttgcttgctcaaatgaataagcaattt |
100 |
Q |
| |
|
|||||||||||||||||| ||| |||| ||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34926322 |
tattcatgggaattggag-gggtgttcgatcaaacttctaacttccgaaggggaggtggctttctgatcaaagttgcttgctcaaatgaataagcaattt |
34926420 |
T |
|
| Q |
101 |
caatcaactttggctctgaccctttcaaacctccaaagaaaattccaaatggctgacccttttcatatcctgctggaacactcagtccaggataacctcc |
200 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
34926421 |
caatcaactttggatctgagcctttcaaacctccaaagcaaattccaaatggctgatccttttcatatcctgctggaacaatcactccaggataacctcc |
34926520 |
T |
|
| Q |
201 |
aatagcaagtatatggctaaaggaccaaataggtgttactacagcatcaagtttatttcttttcatcagtttctcaaacccattttgtgaccatcttgtc |
300 |
Q |
| |
|
||| |||||||| | |||||||| | |||| |||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||| |
|
|
| T |
34926521 |
aatggcaagtatgttactaaaggatgccaaaggtattaccacagcatcaagtttatttcttttcatcagtttttcaaacccattctgtgacgatcttgtc |
34926620 |
T |
|
| Q |
301 |
atgtttaataatgcttgtttttctgctttaccaattccatttgtcttttcagcttgcaccataacatcttggccatactcaagtttctcctacaatgttt |
400 |
Q |
| |
|
|| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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|
| T |
34926621 |
atatttaataatgcttgtttctctgctttcccaattccgtttgtcttttcagcttgcaccatgagatcttggccatactcaagtttctcctacaatgttt |
34926720 |
T |
|
| Q |
401 |
atacaacaattaagatgctatcgt |
424 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
34926721 |
atacaacaattaagatgctatcgt |
34926744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 55 - 424
Target Start/End: Original strand, 34896187 - 34896556
Alignment:
| Q |
55 |
ggtggctttctgatcaaagttgcttgctcaaatgaataagcaatttcaatcaactttggctctgaccctttcaaacctccaaagaaaattccaaatggct |
154 |
Q |
| |
|
|||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||| |
|
|
| T |
34896187 |
ggtgactttctgatcaaagttgcttgctcgaaggaataagcaatttcaatcaactttggctctgacccttttaaaccaccaaagcaaattccaaatggca |
34896286 |
T |
|
| Q |
155 |
gacccttttcatatcctgctggaacactcagtccaggataacctccaatagcaagtatatggctaaaggaccaaataggtgttactacagcatcaagttt |
254 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34896287 |
cacccttttcatatcctgctggaacactcactccaggataacctccaatagcaagtatgtgactaaaggaccaaaaaggtgttactacagcatcaagttt |
34896386 |
T |
|
| Q |
255 |
atttcttttcatcagtttctcaaacccattttgtgaccatcttgtcatgtttaataatgcttgtttttctgctttaccaattccatttgtcttttcagct |
354 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34896387 |
atttattttcatcagtttctcaaacccattttctgaccatcttgtcatgtttaataatgcttgtttttctgctttaccaattccatttgtcttttcagct |
34896486 |
T |
|
| Q |
355 |
tgcaccataacatcttggccatactcaagtttctcctacaatgtttatacaacaattaagatgctatcgt |
424 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||||||||||| |||||| |||||||||||| ||||||| |
|
|
| T |
34896487 |
tgcaccatgacatcttggccatactccattttctcctacaacttttatataacaattaagatcctatcgt |
34896556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 51 - 421
Target Start/End: Original strand, 34909673 - 34910042
Alignment:
| Q |
51 |
gggaggtggctttctgatcaaagttgcttgctcaaatgaataagcaatttcaatcaactttggctctgaccctttcaaacctccaaagaaaattccaaat |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
34909673 |
gggaggtggctttctgatcaaagttgcttgctcgaatgaataagcaatttcaatcaactttggctctgaccctttcaaaccaccaaaacaaattccaaat |
34909772 |
T |
|
| Q |
151 |
ggctgacccttttcatatcctgctggaacactcagtccaggataacctccaatagcaagtatatggctaaaggaccaaataggtgttactacagcatcaa |
250 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| |||||| | ||||||||||| |
|
|
| T |
34909773 |
ggtacacccttttcatatcctgctggaacactcactccaggataacctccaatagccagtatgtggctaaaggaccaaaaaggtgtcattacagcatcaa |
34909872 |
T |
|
| Q |
251 |
gtttatttcttttcatcagtttctcaaacccattttgtgaccatcttgtcatgtttaataatgcttgtttttctgctttaccaattccatttgtcttttc |
350 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||| ||| || |||||||||| |||||||||||| |||| || ||||||||||| |
|
|
| T |
34909873 |
gtttatttattttcatcagtttctcaaacccattttctgaccatcttgacatattcaataatgcttctttttctgctttcccaaaaccgtttgtcttttc |
34909972 |
T |
|
| Q |
351 |
agcttgcaccataacatcttggccatactcaagtttctcctacaatgtttatacaacaattaagatgctat |
421 |
Q |
| |
|
||||||||||| ||||||||||||||||| | ||||||||||||| |||||||||||||| |||| |||| |
|
|
| T |
34909973 |
agcttgcaccaatacatcttggccatactccattttctcctacaat-tttatacaacaattcagattctat |
34910042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 52 - 412
Target Start/End: Original strand, 34919629 - 34919992
Alignment:
| Q |
52 |
ggaggtggctttctgatcaaagttgcttgctcaaatgaataagcaatttcaatcaactttggctctgaccctttcaaacctccaaagaaaattccaaatg |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
34919629 |
ggaggtggctttctgatcaaagttgcttgctcaaatgaataagcaatttcaatcaacttcggctctgagcctttcaaacctccaaaacaaattccaaatg |
34919728 |
T |
|
| Q |
152 |
gctgacccttttcatatcctgctggaacactcagtccaggataacctccaatagcaagtatatggctaaaggaccaaataggtgttactacagcatcaag |
251 |
Q |
| |
|
||| ||||||||||||||||||||||||| | | ||||||||||||||||||||||||||| |||||||| ||| ||| ||||| ||||||||||| |
|
|
| T |
34919729 |
gcttacccttttcatatcctgctggaacaatgattccaggataacctccaatagcaagtatgctactaaaggatgaaaaaggcgttaccacagcatcaag |
34919828 |
T |
|
| Q |
252 |
tttatttcttttcatcagtttctcaaacccattttgtgaccatcttgtcatgtttaataatgcttgtttttctgctttaccaattccatttgtcttttca |
351 |
Q |
| |
|
|| |||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | | | ||||||||||||||||||||| |
|
|
| T |
34919829 |
ttcatttgtttttatcagtttctcaaacccattttctgaccatcttgtcatgtttaataatgcttctttctgtatacttccaattccatttgtcttttca |
34919928 |
T |
|
| Q |
352 |
gcttgcaccataacatcttggccatac---tcaagtttctcctacaatgtttatacaacaatta |
412 |
Q |
| |
|
||||||| ||| | ||||||||||||| ||||||| |||||||||| ||||||||||||||| |
|
|
| T |
34919929 |
gcttgcaacatgatatcttggccatacttatcaagttcctcctacaatttttatacaacaatta |
34919992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 55 - 269
Target Start/End: Original strand, 34913939 - 34914153
Alignment:
| Q |
55 |
ggtggctttctgatcaaagttgcttgctcaaatgaataagcaatttcaatcaactttggctctgaccctttcaaacctccaaagaaaattccaaatggct |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34913939 |
ggtggctttctgatcaaagttgcttgctcaaatgaataagcaatctcaatcaactttggctctgaccctttcaaacctccaaagcaaattccaaatggct |
34914038 |
T |
|
| Q |
155 |
gacccttttcatatcctgctggaacactcagtccaggataacctccaatagcaagtatatggctaaaggaccaaataggtgttactacagcatcaagttt |
254 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| |||| |||||||||||||||||||||| |||||| | ||| ||||||||| |||| ||||||||| |
|
|
| T |
34914039 |
gacctttttcatatcctgctggaacaatcactccaagataacctccaatagcaagtatgctactaaagaatgaaaaaggtgttaccacaggatcaagttt |
34914138 |
T |
|
| Q |
255 |
atttcttttcatcag |
269 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
34914139 |
atttattttcatcag |
34914153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 34918962 - 34919072
Alignment:
| Q |
140 |
aaattccaaatggctgacccttttcatatcctgctgga-----acactcagtccaggataacctccaatagcaagtat-at--ggctaaaggaccaaata |
231 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| || | ||||||||||||| | |
|
|
| T |
34918962 |
aaattccaaatgacatgcccttttcatatcctgctggaatggaacactcagtccaggataacctccaataacaagtatgatgagactaaaggaccaaaaa |
34919061 |
T |
|
| Q |
232 |
ggtgttactac |
242 |
Q |
| |
|
||||||||||| |
|
|
| T |
34919062 |
ggtgttactac |
34919072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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