View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19849_high_1 (Length: 783)
Name: NF19849_high_1
Description: NF19849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19849_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 650; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 16 - 715
Target Start/End: Original strand, 47798621 - 47799320
Alignment:
| Q |
16 |
cagagacgtcaatgagttcaattaatggaacatcagcaacagcattactagattctgaaatgagcttccttatgtgtccacttttggaaattaatggaaa |
115 |
Q |
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| T |
47798621 |
cagagacgtcaatgagttcaattaatggaacatcagcaacagcattactagattctgaaatgagcttccttatgtgtccacttttggaaattaatggaaa |
47798720 |
T |
|
| Q |
116 |
ctgcaaattacattagagttatgaaaaataattcaataattttgatttccaaattaacaacttttagtactatacatgtatcacctatatcttgcttctt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47798721 |
ctgcaaattacattagagttatgaaaaataattcaataattttgatttccaaattaacaacttttagtactatacatatatcacctatatcttgcttctt |
47798820 |
T |
|
| Q |
216 |
aatctaagtccaattactattctagataaaataaagaataaaacctatatgtggagtcaactacatagatcaaaccacatcataatgttctatcaacaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47798821 |
aatctaagtccaattactattctagataaaataaagaataaaacctatatgtggagtcaactacatagatcaaaccacatcataatgttctatcaacaaa |
47798920 |
T |
|
| Q |
316 |
ggtggaaataattgattgaaaaaacattaccaaggactagaaatcattactctccatttaatgatattatgattagtaattttgatatttgaatttgttc |
415 |
Q |
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| T |
47798921 |
ggtggaaataattgattgaaaaaacattaccaaggactagaaatcattactctccatttaatgatattatgattagtaattttgatatttgaatttgttc |
47799020 |
T |
|
| Q |
416 |
cctaccttgtgtaacgaataggaagcttcaccaatttgtctcatgatgatgcaattgcattccaattttttcttcaactgtggcagacttgcattgtgta |
515 |
Q |
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| T |
47799021 |
cctaccttgtgtaacgaataggaagcttcaccaatttgtctcatgatgatgcaattgcattccaattttttcttcaactgtggcagacttgcattgtgta |
47799120 |
T |
|
| Q |
516 |
ctactgcatatatgaacatagacaagtaacagagnnnnnnngcgttactatttaacaatttttggaacatttttnnnnnnngtgttaccagcacggcacg |
615 |
Q |
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| T |
47799121 |
ctactgcatatatgaacatagacaagtaacagagaaaaaaagcgttactatttaacattttttggaacatttttaaaaaaagtgttaccagcacggcacg |
47799220 |
T |
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| Q |
616 |
gtaagtcggtaacgcagatgcagctccgcaaatcgatttgaaaactctcaggtcatccattttctctctagtcactggtgaggcttcgcgtttatctctc |
715 |
Q |
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| T |
47799221 |
gtaagtcggtaacgcagatgcagctccgcaaatcgatttgaaaactctcaggtcatccattttctctctagtcactggtgaggcttcgcgtttatctctc |
47799320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 8e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 39777511 - 39777384
Alignment:
| Q |
27 |
atgagttcaattaatggaacatcagcaacagcattactagattctgaaatgagcttccttatgtgtccacttttggaaattaatggaaactgcaaattac |
126 |
Q |
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| T |
39777511 |
atgagttcaattaatggaacatcatcaacagcatcactagattctgaaatgagcttccttatgtatccactttttgaaattaatggaaactgcaaattac |
39777412 |
T |
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| Q |
127 |
attagagttatgaaaaataattcaataa |
154 |
Q |
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| T |
39777411 |
gttagagttatgaaaaataattcaataa |
39777384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 257 - 453
Target Start/End: Complemental strand, 39777284 - 39777099
Alignment:
| Q |
257 |
aacctatatgtggagtcaactacatagatcaaaccacatcataatgttctatcaacaaaggtggaaataattgattgaaaaaacattaccaaggactaga |
356 |
Q |
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|||| ||||| ||||||||||| ||||||||||| ||||||||||||| ||||| ||| | ||| ||||||||||||||||| |||||| |||||| |
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| T |
39777284 |
aaccaatatgcggagtcaactaaatagatcaaacgacatcataatgttgtatcataaaaaaagcaaagaattgattgaaaaaacagaaccaagtactaga |
39777185 |
T |
|
| Q |
357 |
aatcattactctccatttaatgatattatgattagtaattttgatatttgaatttgttccctaccttgtgtaacgaataggaagcttcaccaatttg |
453 |
Q |
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| T |
39777184 |
attcattactctccattta-----------gttagtaagtttgatatttgagtttgttgactaccttgtgtaacgaataggaagcttcgccaatttg |
39777099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 39812184 - 39812147
Alignment:
| Q |
273 |
caactacatagatcaaaccacatcataatgttctatca |
310 |
Q |
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| T |
39812184 |
caactacatggatcaaacgacatcataatgttctatca |
39812147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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