View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19849_high_3 (Length: 436)
Name: NF19849_high_3
Description: NF19849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19849_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 12 - 418
Target Start/End: Complemental strand, 525671 - 525265
Alignment:
| Q |
12 |
agagaaacatgggtttgtacacacgtacagctgtgagtctgtgactgcggcgagggagtgagcgaaatggtttgttattttttgtcctttctctcttttg |
111 |
Q |
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| T |
525671 |
agagaaacatgggtttgtacacacgtacagctgtgagtctgtgactgcggcgagggagtgagcgaaatggtttgttattttttgtcctttctctcttttg |
525572 |
T |
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| Q |
112 |
ttctcatcctcctaatcacacgcaacgcagcgtcctttattcttttttcctaggacttgaatcacttatttcactactatactagctagtggtattaaat |
211 |
Q |
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| T |
525571 |
ttctcatcctcctaatcacacgcaacgcagcgtcctttattcttttttcctaggacttgaatcacttatttcactactatactagctagtggtattaaat |
525472 |
T |
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| Q |
212 |
aaaatagtaacctcaactgtttcagggacgaattcatttaattttattcaacatgcaaaattcaatcgtatattttttaaaggaacctccaaatagttag |
311 |
Q |
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| T |
525471 |
aaaatagtaacctcaactgtttcagggacgaattcatttaattttattcaacatgcaaaattcaatcgtatattttttaaaggaacctccaaatagttag |
525372 |
T |
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| Q |
312 |
tttattgttcgctttcttttccccaaatttcatttttccctttgcttcaaaattcatctaactttataatccaattttaatttgtgtggtccatttaaaa |
411 |
Q |
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| T |
525371 |
tttattgttcgctttcttttccccaaatttcatttttccctttgcttcaaaattcatctaactttataatccaattttaatttgtgtggtccatttaaaa |
525272 |
T |
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| Q |
412 |
ttacccg |
418 |
Q |
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| T |
525271 |
ttacccg |
525265 |
T |
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