View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19849_high_8 (Length: 239)
Name: NF19849_high_8
Description: NF19849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19849_high_8 |
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| [»] scaffold0608 (1 HSPs) |
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Alignment Details
Target: scaffold0608 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 4338 - 4116
Alignment:
| Q |
1 |
gtaacgtaattggaggatgaggtacggtaaaagaaccttaacaagtcatgaaccaggtcaatggcc-ttaacaagtcataatcaattaatcttcatgtat |
99 |
Q |
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| T |
4338 |
gtaacataattggaggatgaggtacggtaaaagaaccttaacaagtcatgaaccaggtcaatggcccttaacaagtcataatcaattaatcttcatgtat |
4239 |
T |
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| Q |
100 |
aaaaaattaggttcaagaaaatgagaagaccatcccttgcgtaatgagaagactatgtcttagtacattacatagattcttcttctttctttccatattt |
199 |
Q |
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| T |
4238 |
aaaaaattaggttcaagaaaatgagaagaccatcccttgcgtaatgacaagactatgtcttagtacattacatagattct---tctttctttccatattt |
4142 |
T |
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| Q |
200 |
tccatttccaccattaatttaattct |
225 |
Q |
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||||||| |||||||||||||||||| |
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| T |
4141 |
tccattttcaccattaatttaattct |
4116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 11108901 - 11108679
Alignment:
| Q |
1 |
gtaacgtaattggaggatgaggtacggtaaaagaaccttaacaagtcatgaaccaggtcaatggcc-ttaacaagtcataatcaattaatcttcatgtat |
99 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11108901 |
gtaacataattggaggatgaggtacggtaaaagaaccttaacaagtcatgaaccaggtcaatggcccttaacaagtcataatcaattaatcttcatgtat |
11108802 |
T |
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| Q |
100 |
aaaaaattaggttcaagaaaatgagaagaccatcccttgcgtaatgagaagactatgtcttagtacattacatagattcttcttctttctttccatattt |
199 |
Q |
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| T |
11108801 |
aaaaaattaggttcaagaaaatgagaagaccatcccttgcgtaatgacaagactatgtcttagtacattacatagattct---tctttctttccatattt |
11108705 |
T |
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| Q |
200 |
tccatttccaccattaatttaattct |
225 |
Q |
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||||||| |||||||||||||||||| |
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| T |
11108704 |
tccattttcaccattaatttaattct |
11108679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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