View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19849_low_11 (Length: 235)
Name: NF19849_low_11
Description: NF19849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19849_low_11 |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 15195926 - 15196146
Alignment:
| Q |
1 |
ttccaaacaacttaacccgcatgaagaagtgaattttgtgttatgtataagtgttagatcaaggttggttccaccactatcatatgattattttggaaat |
100 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15195926 |
ttccaaacaactggactcgcatgaagaagtgaattttgtgttatgtataagtgttagatcaaggttggttccaccactatcatatgattattttggaaat |
15196025 |
T |
|
| Q |
101 |
gctatgatagtttgtggggttacaatgaaagtcagggagctattagaagaaggcgggcttggtaaaggtgctttagagatgtacaagattattgctttgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15196026 |
gctatgatagtttgtggggttacaatgaaagtcagggagctattagaagaaggcgggcttggtaaaggttctttagagatgtacaagattattgctttgc |
15196125 |
T |
|
| Q |
201 |
actctgatgagaagttaaaga |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
15196126 |
actctgatgagaagttaaaga |
15196146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 221
Target Start/End: Complemental strand, 30141943 - 30141787
Alignment:
| Q |
57 |
gatcaaggttggttccaccactatcatatgattattttggaaatgctatgatagtttgtggggttacaatgaaagtcagggagctattagaagaaggcgg |
156 |
Q |
| |
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|||||||||||||| |||||| | ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| || |
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| T |
30141943 |
gatcaaggttggtttcaccaccaccatatgattattttggaaatgctatgatac--------------atgaaagtcaaggagctattagaagaaggtgg |
30141858 |
T |
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| Q |
157 |
gcttggtaaaggtgctttagagatgta------caagattattgctttgcactctgatgagaagttaaaga |
221 |
Q |
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| T |
30141857 |
gcttggtaaaggtgttttagagatgcaatgaatcaggagtattgctttgcactctgatgagaagttaaaga |
30141787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 15744879 - 15744933
Alignment:
| Q |
158 |
cttggtaaaggtgctttagagatgtacaagattattgctttgcactctgatgaga |
212 |
Q |
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| T |
15744879 |
cttggtaaaggtgctttggagatgaacaagatgattgctttgcaatctgatgaga |
15744933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 209
Target Start/End: Complemental strand, 8999280 - 8999076
Alignment:
| Q |
5 |
aaacaacttaacccgcatgaagaagtgaattttgtgttatgtataagtgttagatcaaggttggttccaccactatcatatgattattttggaaatgcta |
104 |
Q |
| |
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||||||||| ||| || |||||||| ||||||||| ||||||| || ||||||| ||||||| |||||||| | || | || ||||||||||||||| |
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| T |
8999280 |
aaacaacttgacctacaagaagaagttaattttgtgatatgtattagcgttagattaaggttgattccaccattgccagaggaatattttggaaatgctt |
8999181 |
T |
|
| Q |
105 |
tgatagtttgtggggttacaatgaaagtcagggagctattagaagaaggcgggcttggtaaaggtgctttagagatgtacaagattattgctttgcactc |
204 |
Q |
| |
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|||||||||| ||||||||||||||| | || || | | |||||| || || ||||||||||||| |||||||| |||||| || ||||||||||| |
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| T |
8999180 |
tgatagtttgcaaggttacaatgaaagttggagaattacttggagaaggtggactgggtaaaggtgcttaagagatgtgcaagatgatagctttgcactc |
8999081 |
T |
|
| Q |
205 |
tgatg |
209 |
Q |
| |
|
||||| |
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|
| T |
8999080 |
tgatg |
8999076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 221
Target Start/End: Original strand, 7656000 - 7656135
Alignment:
| Q |
86 |
gattattttggaaatgctatgatagtttgtggggttacaatgaaagtcagggagctattagaagaaggcgggcttggtaaaggtgctttagagatgtaca |
185 |
Q |
| |
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|||||||||||||| || || |||| ||| ||| ||| ||||||||| ||||| | || || ||||| ||| |||||||||||||||| |||| | | |
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| T |
7656000 |
gattattttggaaacgcgattataggttgcgggtttaaaatgaaagttggggagttgttggaggaaggtgggattggtaaaggtgctttgttgatgaata |
7656099 |
T |
|
| Q |
186 |
agattattgctttgcactctgatgagaagttaaaga |
221 |
Q |
| |
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|| | |||||||||||||| |||| || ||||||| |
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| T |
7656100 |
agttaattgctttgcactcgaatgaaaaattaaaga |
7656135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 221
Target Start/End: Complemental strand, 7615532 - 7615371
Alignment:
| Q |
60 |
caaggttggttccaccactatcatatgattattttggaaatgctatgatagtttgtggggttacaatgaaagtcagggagctattagaagaaggcgggct |
159 |
Q |
| |
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||||||| ||||||||| || || | |||||||||||||||| | ||| |||| ||||| ||||||||| ||||| | | |||||||| || || |
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| T |
7615532 |
caaggttagttccaccattaccagaatattattttggaaatgcacttataagttgtatggttaaaatgaaagttggggagttggtggaagaaggtggact |
7615433 |
T |
|
| Q |
160 |
tggtaaaggtgctttagagatgtacaagattattgctttgcactctgatgagaagttaaaga |
221 |
Q |
| |
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| |||||||||||| |||||| ||||| | |||| || ||| ||||||||||||| |||| |
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| T |
7615432 |
ttgtaaaggtgcttgtgagatgaacaagttaattgtttcacacactgatgagaagttgaaga |
7615371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 221
Target Start/End: Complemental strand, 7637349 - 7637188
Alignment:
| Q |
60 |
caaggttggttccaccactatcatatgattattttggaaatgctatgatagtttgtggggttacaatgaaagtcagggagctattagaagaaggcgggct |
159 |
Q |
| |
|
||||||| |||||||| || || | ||||||||||||||||| | ||| |||| ||||| |||||||| |||| | || || ||||| || || |
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| T |
7637349 |
caaggttagttccaccgttaccagaagattattttggaaatgcacttataagttgtatggttaaaatgaaagctggggaattgttggaggaaggtggact |
7637250 |
T |
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| Q |
160 |
tggtaaaggtgctttagagatgtacaagattattgctttgcactctgatgagaagttaaaga |
221 |
Q |
| |
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| ||||||||||||| |||||| ||||| | ||||||| ||| ||||||||||||| |||| |
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|
| T |
7637249 |
ttgtaaaggtgctttggagatgaacaagttaattgcttcacacactgatgagaagttgaaga |
7637188 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 173
Target Start/End: Complemental strand, 6500775 - 6500655
Alignment:
| Q |
53 |
gttagatcaaggttggttccaccactatcatatgattattttggaaatgctatgatagtttgtggggttacaatgaaagtcagggagctattagaagaag |
152 |
Q |
| |
|
|||||| ||||| | ||||||| | || || | |||||||||||||||||| |||||| |||| |||||| ||||||| | ||| | || ||||||| |
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| T |
6500775 |
gttagaccaaggcttgttccactattaccacaagattattttggaaatgctgtgatagattgtagggttagcatgaaagctggtgagttgttggaagaag |
6500676 |
T |
|
| Q |
153 |
gcgggcttggtaaaggtgctt |
173 |
Q |
| |
|
||||| ||||||||||||||| |
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| T |
6500675 |
gcgggattggtaaaggtgctt |
6500655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 11969188 - 11969143
Alignment:
| Q |
86 |
gattattttggaaatgctatgatagtttgtggggttacaatgaaag |
131 |
Q |
| |
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|||||||||||||||||| | ||| ||||||||||| ||||||||| |
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| T |
11969188 |
gattattttggaaatgctgttataatttgtggggtttcaatgaaag |
11969143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 173
Target Start/End: Original strand, 40147197 - 40147315
Alignment:
| Q |
55 |
tagatcaaggttggttccaccactatcatatgattattttggaaatgctatgatagtttgtggggttacaatgaaagtcagggagctattagaagaaggc |
154 |
Q |
| |
|
|||||||||||| ||||||||| | | | |||||||||||||||||| | ||||||| ||||||||||||||| | ||| | || ||||| || |
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| T |
40147197 |
tagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttgaagtttgtagggttacaatgaaagcgggagagttgttggaagatggt |
40147296 |
T |
|
| Q |
155 |
gggcttggtaaaggtgctt |
173 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
40147297 |
gggcttggtaaaggtgctt |
40147315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 4646 - 4589
Alignment:
| Q |
155 |
gggcttggtaaaggtgctttagagatgtacaagattattgctttgcactctgatgaga |
212 |
Q |
| |
|
||||||||||| || |||| |||||| ||||||| |||| ||||||||||||||||| |
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|
| T |
4646 |
gggcttggtaagggctctttggagatgaacaagatgattgttttgcactctgatgaga |
4589 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 8936027 - 8936099
Alignment:
| Q |
149 |
gaaggcgggcttggtaaaggtgctttagagatgtacaagattattgctttgcactctgatgagaagttaaaga |
221 |
Q |
| |
|
||||| || ||| |||||||||||| |||||| ||||| | |||||||| ||| ||||||||||||| |||| |
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| T |
8936027 |
gaaggtggactttgtaaaggtgcttgtgagatgaacaagttaattgctttacacactgatgagaagttgaaga |
8936099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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