View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19849_low_12 (Length: 219)
Name: NF19849_low_12
Description: NF19849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19849_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 55804530 - 55804720
Alignment:
| Q |
13 |
cagagagataagacacatgaaatcagaagtcgaaccaaaaaccccgttcaaaggcccccacaaacttgaatatatgaaattattaaactcaacttacttt |
112 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55804530 |
cagagagataagacacatgaaatcaggagtcgaaccaaaaaccccgttcagaggcccccacaaacttgaatatatgaaattattaaactcaacttacttt |
55804629 |
T |
|
| Q |
113 |
cttaatctcttcttttgtttcacaattttcaatcaaatagctgaaagtgtatgaatcgagctttacgttggcatctcgcatttgtttgaga |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55804630 |
cttaatctcttcttttgtttcacaattttcaatcaaatagctgaaagtgtatgaatcgagctttacgttggcatctcgcatttgtttgaga |
55804720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 80 - 202
Target Start/End: Complemental strand, 31464987 - 31464865
Alignment:
| Q |
80 |
gaatatatgaaattattaaactcaacttactttcttaatctcttcttttgtttcacaattttcaatcaaatagctgaaagtgtatgaatcgagctttacg |
179 |
Q |
| |
|
||||||||| |||||||||||||||||||| | || || || ||||||||||||||||| ||||||||||||||||||| | |||||| ||||||| |
|
|
| T |
31464987 |
gaatatatggaattattaaactcaacttaccatatttatatcatcttttgtttcacaattgccaatcaaatagctgaaagtctgtgaatcaggctttaca |
31464888 |
T |
|
| Q |
180 |
ttggcatctcgcatttgtttgag |
202 |
Q |
| |
|
||||| ||| |||| |||||||| |
|
|
| T |
31464887 |
ttggcctcttgcatgtgtttgag |
31464865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 193
Target Start/End: Complemental strand, 31451894 - 31451783
Alignment:
| Q |
82 |
atatatgaaattattaaactcaacttactttcttaatctcttcttttgtttcacaattttcaatcaaatagctgaaagtgtatgaatcgagctttacgtt |
181 |
Q |
| |
|
||||||| ||||||| |||||||||||| || || || || |||| |||||||||| | ||| |||||||| ||||| | |||||| || ||||||| |
|
|
| T |
31451894 |
atatatggaattattcaactcaacttaccttatttatatcgtcttctgtttcacaaatgccaaccaaatagcgaaaagtctgtgaatcaggcattacgtt |
31451795 |
T |
|
| Q |
182 |
ggcatctcgcat |
193 |
Q |
| |
|
||||||| |||| |
|
|
| T |
31451794 |
ggcatcttgcat |
31451783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 29710929 - 29710739
Alignment:
| Q |
13 |
cagagagataagacacatgaaatcagaagtcgaaccaaaaaccccgttcaaaggcccccacaaacttgaatatatgaaattattaaactcaacttacttt |
112 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29710929 |
cagagagataagacacatgaaatcagtagtcgaaccaaaaaccccgttcataggcccccacaaacttgaatatatgaaattattaaactcaacttacttt |
29710830 |
T |
|
| Q |
113 |
cttaatctcttcttttgtttcacaattttcaatcaaatagctgaaagtgtatgaatcgagctttacgttggcatctcgcatttgtttgaga |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29710829 |
cttaatctcttcttttgtttcacaattttcaatcaaatagctgaaagtgtatgaatcgagctttatgttggcatctcgcatttgtttgaga |
29710739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 15169888 - 15169701
Alignment:
| Q |
13 |
cagagagataagacacatgaaatcagaagtcgaaccaaaaaccccgttcaaaggcccccacaaacttgaatatatgaaattattaaactcaacttacttt |
112 |
Q |
| |
|
|||||| ||||||||||||||| ||| | ||| ||||||||||| | ||| ||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15169888 |
cagagatataagacacatgaaaccaggaatcggaccaaaaaccc-gctcagaggccccca--aacttgtatatatgaaattattaaactcaacttacttt |
15169792 |
T |
|
| Q |
113 |
cttaatctcttcttttgtttcacaattttcaatcaaatagctgaaagtgtatgaatcgagctttacgttggcatctcgcatttgtttgaga |
203 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15169791 |
tttaatctcttcttttgtttcacaattgccaatcaaatagctgaaagtgtatgaatcgagctttatgttggcatctcgcatttgtttgaga |
15169701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 15165620 - 15165432
Alignment:
| Q |
14 |
agagagataagacacatgaaatcagaagtc-gaaccaaaaaccccgttcaaaggcccccacaaacttgaatatatgaaattattaaactcaacttacttt |
112 |
Q |
| |
|
||||||||||||||||||||||||| | || || | ||||| |||| ||||||||||||| ||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
15165620 |
agagagataagacacatgaaatcaggaatcagatcaaaaaaacccgctcaaaggccccca--aacttgaatatatgaaattattaaactcatcgtacttt |
15165523 |
T |
|
| Q |
113 |
cttaatctcttcttttgtttcacaattttcaatcaaatagctgaaagtgtatgaatcgagctttacgttggcatctcgcatttgtttgaga |
203 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15165522 |
tttaatctcttcttttgttgcacaattgccaatcaaatagctgaaagtgtatgaatcgagctttatgttggcatctcgcatttgtttgaga |
15165432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 126
Target Start/End: Complemental strand, 25460246 - 25460211
Alignment:
| Q |
91 |
attattaaactcaacttactttcttaatctcttctt |
126 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25460246 |
attattaaactcaacttacttttttaatctcttctt |
25460211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University