View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19849_low_2 (Length: 538)
Name: NF19849_low_2
Description: NF19849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19849_low_2 |
 | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 508; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Complemental strand, 33302510 - 33301987
Alignment:
| Q |
1 |
atgacgaggagtggtacttttatatcacttcctgcaggggaggaagtatttataccgttagctgaggaagatgacgatggagattggtcaagaaattagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33302510 |
atgacgaggagtggtacttttatatcacttcttgcaggggaggaagtatttataccgttagctgaggaagatgacgatggagattggtcaagaaattagc |
33302411 |
T |
|
| Q |
101 |
gtaacatttttgcgtatcacaagaggcgttgactatgaagaatgaaggacctgatgaagttatcatagaaccagacttcacagcaagtgcagtagctact |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33302410 |
gtaccatttttgcgtatcacaagaggcgttgactatgaagaatgaaggacctgatgaagttatcatagaatcagacttcacagcaagtgcagtagctact |
33302311 |
T |
|
| Q |
201 |
cgagaaggaataaaggttatgcttaattatattaattttgaaatcctgcttgcctcaatgaattttggttaatgaattgaaatggatcgcatattttctg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33302310 |
cgagaaggaataaaggttatgcttaattatattaattttgaaatcctgcttgcctcaatgaattttggttaatgaattgaaatggatcgcatattttctg |
33302211 |
T |
|
| Q |
301 |
aatttgttatgtataaaccacatattgctagatattgtacccctttcattttctacacgatccgaataaatcaagtttatgcgaacaaagcaattaaagg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33302210 |
aatttgttatgtataaaccacatattgctagatattgtacccctttcattttctacacgatccgaataaatcaagtttatgcgaacaaagcaattagagg |
33302111 |
T |
|
| Q |
401 |
acattattatagttagttatttaacaaatggaggtttctttaactttggatcctctataaacagatgtcctgcaagcacaagtcgtagcaccagcacaag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33302110 |
acattattatagttagttatttaacaaatggaggtttctttaactttggatcctctataaacagatgtcctgcaagcacaagtcgtagcaccagcacaag |
33302011 |
T |
|
| Q |
501 |
cacaagttgaagaggttgctattg |
524 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
33302010 |
cacaagttgaagaggttgctattg |
33301987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 208 - 414
Target Start/End: Complemental strand, 33281656 - 33281455
Alignment:
| Q |
208 |
gaataaaggttatgcttaattatattaattttgaaatcctgcttgcctcaatgaattttggttaatgaattgaaatggatcgcatattttctgaatttgt |
307 |
Q |
| |
|
||||||||||||||||| |||||||||| || || |||||||||||||| ||||||||||||||||||||| ||||| || |||||||||||||| |
|
|
| T |
33281656 |
gaataaaggttatgctt-----tattaattttcaagtctcgcttgcctcaatgagttttggttaatgaattgaaattgatcgtatgttttctgaatttgt |
33281562 |
T |
|
| Q |
308 |
tatgtataaaccacatattgctagatattgtacccctttcattttctacacgatccgaataaatcaagtttatgcgaacaaagcaattaaaggacattat |
407 |
Q |
| |
|
||| ||||||||||||||||| ||| | |||||| ||||||||||||||||||||| || |||||| ||||||| | |||||||||| || ||||| || |
|
|
| T |
33281561 |
tatatataaaccacatattgcatgatctagtacccatttcattttctacacgatccgcatcaatcaattttatgcaaccaaagcaattgaaagacatcat |
33281462 |
T |
|
| Q |
408 |
tatagtt |
414 |
Q |
| |
|
||||||| |
|
|
| T |
33281461 |
tatagtt |
33281455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 208 - 382
Target Start/End: Complemental strand, 33397393 - 33397224
Alignment:
| Q |
208 |
gaataaaggttatgcttaattatattaattttgaaatcctgcttgcctcaatgaattttggttaatgaattgaaatggatcgcatattttctgaatttgt |
307 |
Q |
| |
|
||||||||||||||||| |||||||||| || || ||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |
|
|
| T |
33397393 |
gaataaaggttatgctt-----tattaattttcaagtcatgcttgcctcaatgaattttggttaatgaattgaaattgattgcatgttttctgaatttgt |
33397299 |
T |
|
| Q |
308 |
tatgtataaaccacatattgctagatattgtacccctttcattttctacacgatccgaataaatcaagtttatgc |
382 |
Q |
| |
|
||| ||||||||||||||||| ||| | |||||||||||||||||||||||||||| || |||||| ||||||| |
|
|
| T |
33397298 |
tatatataaaccacatattgcatgatctagtacccctttcattttctacacgatccggatcaatcaattttatgc |
33397224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 230 - 414
Target Start/End: Complemental strand, 33408287 - 33408103
Alignment:
| Q |
230 |
tattaattttgaaatcctgcttgcctcaatgaattttggttaatgaattgaaatggatcgcatattttctgaatttgttatgtataaaccacatattgct |
329 |
Q |
| |
|
|||||||||| || ||||||||| |||||||| ||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33408287 |
tattaattttcaagtcctgcttggctcaatgacttttggttaatcaattgaaattgatcgcatgttttctgaatttgttatgtataaaccacatattgca |
33408188 |
T |
|
| Q |
330 |
agatattgtacccctttcattttctacacgatccgaataaatcaagtttatgcgaacaaagcaattaaaggacattattatagtt |
414 |
Q |
| |
|
||| | |||||| |||||||||||||||| || | || |||||| ||||||| | |||||||||| || ||||| |||||||| |
|
|
| T |
33408187 |
tgatctagtacccatttcattttctacacggtctgcatcaatcaattttatgcaaccaaagcaattgaaagacatcgttatagtt |
33408103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 294 - 432
Target Start/End: Complemental strand, 33386118 - 33385979
Alignment:
| Q |
294 |
ttttctgaatttgttatgtataaaccacatattgctagatattgtacccctttcattttctacacgatccgaataaatcaagtttatgcgaacaaagcaa |
393 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||| ||||||||||||| |||| |||||||||||||||||| |||||| ||||||| | |||||||| |
|
|
| T |
33386118 |
ttttcagaatttgttatgtataaaccacagattgtatgatattgtaccccgttcaatttctacacgatccgaatcaatcaactttatgcaaccaaagcaa |
33386019 |
T |
|
| Q |
394 |
ttaaaggacattattatagttag-ttatttaacaaatgga |
432 |
Q |
| |
|
|| || ||||| || |||||||| |||||||||| ||||| |
|
|
| T |
33386018 |
ttgaatgacatcataatagttagattatttaacagatgga |
33385979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 33417965 - 33417885
Alignment:
| Q |
1 |
atgacgaggagtggtacttttatatcacttcctgcaggggaggaagtatttataccgttagctgaggaagatgacgatgga |
81 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||| |||| |||| ||||||||||||||||||| |||| |
|
|
| T |
33417965 |
atgacgaggagtggtacttttatatcacttcctgaaggagaggaaggatttctaccattagctgaggaagatgacggtgga |
33417885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 33417856 - 33417808
Alignment:
| Q |
78 |
tggagattggtcaagaaattagcgtaacatttttgcgtatcacaagagg |
126 |
Q |
| |
|
|||||||||||| |||| |||||||| | ||||||||||||||||||| |
|
|
| T |
33417856 |
tggagattggtcgagaagttagcgtacgagttttgcgtatcacaagagg |
33417808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 208 - 414
Target Start/End: Original strand, 12596 - 12797
Alignment:
| Q |
208 |
gaataaaggttatgcttaattatattaattttgaaatcctgcttgcctcaatgaattttggttaatgaattgaaatggatcgcatattttctgaatttgt |
307 |
Q |
| |
|
||||||||||||||||| |||||||||| || || |||||||||||||| ||||||||||||||||||||| ||||| || |||||||||||||| |
|
|
| T |
12596 |
gaataaaggttatgctt-----tattaattttcaagtctcgcttgcctcaatgagttttggttaatgaattgaaattgatcgtatgttttctgaatttgt |
12690 |
T |
|
| Q |
308 |
tatgtataaaccacatattgctagatattgtacccctttcattttctacacgatccgaataaatcaagtttatgcgaacaaagcaattaaaggacattat |
407 |
Q |
| |
|
||| ||||||||||||||||| ||| | |||||| ||||||||||||||||||||| || |||||| ||||||| | |||||||||| || ||||| || |
|
|
| T |
12691 |
tatatataaaccacatattgcatgatctagtacccatttcattttctacacgatccgcatcaatcaattttatgcaaccaaagcaattgaaagacatcat |
12790 |
T |
|
| Q |
408 |
tatagtt |
414 |
Q |
| |
|
||||||| |
|
|
| T |
12791 |
tatagtt |
12797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University