View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19849_low_4 (Length: 395)
Name: NF19849_low_4
Description: NF19849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19849_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 17 - 370
Target Start/End: Original strand, 37972712 - 37973069
Alignment:
| Q |
17 |
acattattctcagatataattcattgagtattgtatttt-ttgtgctaacataattcatccagtattttgtaagcatttgacatttttaagaatattatt |
115 |
Q |
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| T |
37972712 |
acattattctcagatataattcattgagtattgtatttttttgtgctaacataattcatcgagtatttggtaagcatttgacatttttaagaatattatt |
37972811 |
T |
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| Q |
116 |
tccaaaaattagtactctttttatagcatcctcctttggagcttggcaagcactacgatttgtaacacttttgaattaaatatgtttgagtaagaacgg- |
214 |
Q |
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| T |
37972812 |
tccaaaaattagtactctttttatagcatcctcctttggagcttggcaagcactacgatttgtaacacttttgaattaaatatgtttcagcaagaacgga |
37972911 |
T |
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| Q |
215 |
gaccccgtaaatgggcggtgagatgggttccctcgaattagttgatctttaaatcggatatcaaatttnnnnnnnnnnnnnnnncgtttgagcactggtg |
314 |
Q |
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| T |
37972912 |
gctcccgcaagtgggcagtgagattgatcccctcgaattaatcgacccttagatcgaataccgagttt--tcaaaaaaaaaaaacgtttgagcaatggtg |
37973009 |
T |
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| Q |
315 |
agtgattatataca----atgattgacaactaagcagtcatacactttgcaagtaatcta |
370 |
Q |
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| T |
37973010 |
agtgatcatatacaaccgatgattgacaactaagcagtcatacactttgcaagtaatcta |
37973069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 37952215 - 37952283
Alignment:
| Q |
135 |
tttatagcatcctcctttggagcttggcaagcactacgatttgtaacacttttgaattaaatatgtttgag |
205 |
Q |
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| T |
37952215 |
tttatagcatcctcctttggagttt--caaacactacgatttataacacttttgaattaaatacgtttgag |
37952283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 37952117 - 37952209
Alignment:
| Q |
17 |
acattattctcagatataattcattgagtattgtattttttgtgctaacataattcatccagtattttgtaagcatttgacatttttaagaata |
110 |
Q |
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| T |
37952117 |
acattattttcagatataattcattgtgttttttttctttttttctaatataattcaatgagtattt-gtaagcatttgacatttttaagaata |
37952209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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