View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19849_low_5 (Length: 343)
Name: NF19849_low_5
Description: NF19849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19849_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 37973397 - 37973078
Alignment:
| Q |
1 |
acatgaaaaacatgcatgtatatagagttgttggctagggatggcaatttttccatgtgcaacactcctatttgaatcacactttcagtgctccccttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37973397 |
acatgaaaaacatgcatgtatatagagttgttggctagggatggcaatttttccatgtgcaacactcctatttgaatcacactttcagtgctccccttaa |
37973298 |
T |
|
| Q |
101 |
tttaaacacgtgaaggattttttaactccaaaatcctctcttagaaatttgaaccttctagccttctaatgatataacgatatgatatgatgatttggtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37973297 |
tttaaacacgtgaaggattttttaactccaaaatcctctcttagaaatttgaaccttctagccttctaatg--------atatgatatgatgatttggtt |
37973206 |
T |
|
| Q |
201 |
ggcaaacaagttgcttctctaacttgcttttt-actttaagaatcctttgttcacttgacccttttaagaaatgaaatattgtctcaaatatttactcct |
299 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37973205 |
ggcaaacaagttgcttctctaacttgctttttaattttaagaatcctttgttcacttgactattttaagaaatgaaatattgtctcaaatatttactcct |
37973106 |
T |
|
| Q |
300 |
taattctatgcatcagcatcaatatcat |
327 |
Q |
| |
|
|||||| ||||||||||||||||||||| |
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| T |
37973105 |
taattccatgcatcagcatcaatatcat |
37973078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 190 - 320
Target Start/End: Complemental strand, 37952483 - 37952353
Alignment:
| Q |
190 |
atgatttggttggcaaacaagttgcttctctaacttgctttttactttaagaatcctttgttcacttgacccttttaagaaatgaaatattgtctcaaat |
289 |
Q |
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||||||||||||| | ||||||||||| || ||||||||| ||||| |||||||||||||||||||||||||| ||| |||||||| |||||||||||| |
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| T |
37952483 |
atgatttggttggtatgcaagttgcttccctcacttgctttctacttcaagaatcctttgttcacttgacccttctaaaaaatgaaacattgtctcaaat |
37952384 |
T |
|
| Q |
290 |
atttactccttaattctatgcatcagcatca |
320 |
Q |
| |
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||||||| |||||| | ||||||||||||| |
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| T |
37952383 |
ttttactctttaattttgtgcatcagcatca |
37952353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 37952597 - 37952483
Alignment:
| Q |
51 |
ttccatgtgcaacactcctatttgaatcaca----ctttcagtgctccccttaatttaaacacgtgaaggattttttaactccaaaa-tcctctcttaga |
145 |
Q |
| |
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|||||| | |||||||||||||||||||| | |||||| |||||||||||||||||||| ||||||||||||||| ||||||| | |||||| | | |
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| T |
37952597 |
ttccatatacaacactcctatttgaatcatatatactttcaacgctccccttaatttaaacacatgaaggattttttaagtccaaaagttctctctaaaa |
37952498 |
T |
|
| Q |
146 |
aatttgaaccttcta |
160 |
Q |
| |
|
|||||||| |||||| |
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| T |
37952497 |
aatttgaatcttcta |
37952483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 37951868 - 37951801
Alignment:
| Q |
190 |
atgatttggttggcaaacaagttgcttctctaacttgctttttactttaagaatcctttgttcacttg |
257 |
Q |
| |
|
||||||||||||| || |||||||||||||| ||||||| | ||||||||||||||||||||||||| |
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|
| T |
37951868 |
atgatttggttggtaagcaagttgcttctctgacttgctgtcaactttaagaatcctttgttcacttg |
37951801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 166
Target Start/End: Complemental strand, 37951982 - 37951870
Alignment:
| Q |
52 |
tccatgtgcaacactcctatttgaatcacactttcagtgctccccttaatttaaacacgtgaaggattttttaactccaaaat--cctctcttagaaatt |
149 |
Q |
| |
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||||||| || ||||||| ||||||||||||||||| || |||||||| |||||||| ||||||| |||| ||||||||| |||||||||||||| |
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| T |
37951982 |
tccatgtacatcactcctgtttgaatcacactttcaacgc-ccccttaacttaaacacctgaagga---tttatctccaaaatactctctcttagaaatt |
37951887 |
T |
|
| Q |
150 |
tgaaccttctagccttc |
166 |
Q |
| |
|
|||| ||| |||||||| |
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| T |
37951886 |
tgaatcttttagccttc |
37951870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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