View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19849_low_6 (Length: 282)
Name: NF19849_low_6
Description: NF19849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19849_low_6 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 274
Target Start/End: Complemental strand, 103808 - 103550
Alignment:
| Q |
16 |
gaaaggccagcgagtgagaagcggctcggtaaatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaatatcttcctgtgag |
115 |
Q |
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| T |
103808 |
gaaaggccagcgagtgagaagcggctcggtaaatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaatatcttcctgtgag |
103709 |
T |
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| Q |
116 |
acataaaatagatcattatccctcctattatcatgataaagaggaagtgtaaatccacacattgtaaacaattaaagacaatgactctcacctttgcaca |
215 |
Q |
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| T |
103708 |
acataaaatagatcattatccctcctattatcatgataaagaggaagtgtaaatccacacattgtaaacaattaaagacaatgactctcacctttgcaca |
103609 |
T |
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| Q |
216 |
taggtgacgtgatttcgtccagttaattttttcataaggctgagtatggagttcttctc |
274 |
Q |
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| T |
103608 |
taggtgacgtgatttcgtccagttaattttttcataaggctgagtatggagttcttctc |
103550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 274
Target Start/End: Complemental strand, 164768 - 164516
Alignment:
| Q |
16 |
gaaaggccagcgagtgagaagcggctcggtaaatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaatatcttcctgtgag |
115 |
Q |
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| T |
164768 |
gaaaggccaacgagtgagaagcggctcggtgaatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaagatcttcctatgag |
164669 |
T |
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| Q |
116 |
acataaaatagatcattatccctcctattatcatgataaagaggaagtgtaaatccacacattgtaaacaattaaagacaatgactctcacctttgcaca |
215 |
Q |
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| T |
164668 |
acataaaatggatcattatccctcct------atgttaaaaaggatgtgtaatttcacacattgtgatcaattaaagataaagactctaacctttgcaca |
164575 |
T |
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| Q |
216 |
taggtgacgtgatttcgtccagttaattttttcataaggctgagtatggagttcttctc |
274 |
Q |
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| T |
164574 |
taggtgacgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctc |
164516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 274
Target Start/End: Original strand, 92500 - 92751
Alignment:
| Q |
16 |
gaaaggccagcgagtgagaagcggctcggtaaatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaatatcttcctg-tga |
114 |
Q |
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| T |
92500 |
gaaaggccaacgagttagaagtggctcagtaaaaaggtaaaagctatcccatattaaatcttgtatcaaaggatgaggatagtagatatcttcctgttga |
92599 |
T |
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| Q |
115 |
gacataaaatagatcattatccctcctattatcatgataaagaggaagtgtaaatccacacattgtaaacaattaaagacaatgactctcacctttgcac |
214 |
Q |
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| T |
92600 |
g-cataaaatggaacattatccctcat------acgttaaaga-gatgtgtaaattcatacactgtcatgaattagagacaaagagcctcacctttgcac |
92691 |
T |
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| Q |
215 |
ataggtgacgtgatttcgtccagttaattttttcataaggctgagtatggagttcttctc |
274 |
Q |
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| T |
92692 |
ataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctc |
92751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 13052711 - 13052615
Alignment:
| Q |
16 |
gaaaggccagcgagtgagaagcggctcggtaaatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaatatcttcctgt |
112 |
Q |
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| T |
13052711 |
gaaaggccaacgagtgagaagtggctcggtgaatatatagaagctatcccatatcagatcttgtatcaaaggatgaggatagtaaagatcttcctgt |
13052615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 13052551 - 13052519
Alignment:
| Q |
198 |
gactctcacctttgcacataggtgacgtgattt |
230 |
Q |
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| T |
13052551 |
gactctcacctttgcacattggtgacgtgattt |
13052519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 5691942 - 5692006
Alignment:
| Q |
47 |
aatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaatatcttcctg |
111 |
Q |
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| T |
5691942 |
aatatgtataaactatcccatattagatcttgtatcaaaggatggggatagtaaagatcttcctg |
5692006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 5670065 - 5670129
Alignment:
| Q |
47 |
aatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaatatcttcctg |
111 |
Q |
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| T |
5670065 |
aatatgtataaactatcccatattagatcttgtatcaaaggatgtggatagtaaagatcttcctg |
5670129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 5722329 - 5722393
Alignment:
| Q |
47 |
aatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaatatcttcctg |
111 |
Q |
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| T |
5722329 |
aatatgtataaactatcccataatagatcttgtatcaaaggatggggatagtaaagatcttcctg |
5722393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 5722471 - 5722543
Alignment:
| Q |
202 |
ctcacctttgcacataggtgacgtgatttcgtccagttaattttttcataaggctgagtatggagttcttctc |
274 |
Q |
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|||||||||||||||||||||||| ||| ||| |||| |||||||||||| | ||| |||||||||||| |
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| T |
5722471 |
ctcacctttgcacataggtgacgtactttttgccaattaactttttcataaggttctgtaaggagttcttctc |
5722543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 12137526 - 12137593
Alignment:
| Q |
47 |
aatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaatatcttcctgtga |
114 |
Q |
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| T |
12137526 |
aatatgtataaactatcccacataagatcttgtacaaatggatgaggatagtaaaggtcttcctgtga |
12137593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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