View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19849_low_7 (Length: 272)
Name: NF19849_low_7
Description: NF19849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19849_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 47253563 - 47253797
Alignment:
| Q |
18 |
aatagcttgaggagtttaaaaccttgactttccattctcatacatgttggataaaatcttctgaatcttaagtcttagtccatccactagtattagaata |
117 |
Q |
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| T |
47253563 |
aatagcttgaggagtttaaaaccttgactttccattctcatacatgttggataaaatcttctgaat-taaggtcttagtccatccactagtattaggaaa |
47253661 |
T |
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| Q |
118 |
taggttttggactatttcaaccccacaagtaatttttatgttacttggttactactctctcctattttaaattttaaatataaatagaaagtctaatata |
217 |
Q |
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| T |
47253662 |
taggttttggactatttcaaccccacaagtaatttttatgttacttggttacta----ctcctattttaaattttaaatataaataaaaagtctaatata |
47253757 |
T |
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| Q |
218 |
tttagattggatacatttgattgtttcagacctaagtaag |
257 |
Q |
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| T |
47253758 |
tttagatcggatacatttgattgtttcagacctaagtaag |
47253797 |
T |
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