View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1984_high_1 (Length: 532)
Name: NF1984_high_1
Description: NF1984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1984_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 11 - 514
Target Start/End: Complemental strand, 29374776 - 29374273
Alignment:
| Q |
11 |
cagagatcataaacaaagcaagaacaaaaattcagacaggttgaaaatgaatacttaccatactaacaagcacgtaaaccaagcaatacatcgaagtcag |
110 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29374776 |
cagagatcataaacaaagcaagaacagaaattcagacaggttgaaaatgaatacttaccatactaacaagcacgtaaaccaagcaatacatcgaagtcag |
29374677 |
T |
|
| Q |
111 |
actaagaaagcagctccacattataagcaagagcatcactgaaccaaacttaatgaaagactgaaacccccttacagcagagtccttccaaaaaatcaat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29374676 |
actaagaaagcagctccacattataagcaagagcatcactgaaccaaacttaatgaaagactgaaacccccttacagcagagtccttccaaaaaatcaat |
29374577 |
T |
|
| Q |
211 |
gataacttaagtaagctccccaatttcaagcaacccctacacaccatcggccaatgacgttcaataaacatcgcagttttgtctctacaacaaaccacca |
310 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29374576 |
gataacttaagtaagctccccaatttcgagcaacccctacacaccatcggccaatgccgttcaataaacatcgcagttttgtctctacaacaaaccacca |
29374477 |
T |
|
| Q |
311 |
cagttcgagcacgccaacaggcatcttttcgtgaccgaagccatccccaaacttgattgaacaaccctatatcttccatcaccatgacctctacagattc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29374476 |
cagttcgagcacgccaacaggcatcttttcgtgaccgaagccatccccaaacttgattgaacaaccctatatcttccatcaccatgacctctacagattc |
29374377 |
T |
|
| Q |
411 |
cacttacaaacttgatgaaagtgaaacctcactactaaggctaaaactaaaacatcatcaaaagctattgataaccatcgccataaatccaatgaccctt |
510 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29374376 |
cacttacaaacttgatgaaagtgaaacctcactactaaggctaaaactaaaacatcatcaaaagctattgataaccatcgccataaatccaatgaccctt |
29374277 |
T |
|
| Q |
511 |
ttgt |
514 |
Q |
| |
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|||| |
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|
| T |
29374276 |
ttgt |
29374273 |
T |
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