View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1984_high_3 (Length: 334)
Name: NF1984_high_3
Description: NF1984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1984_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 14 - 333
Target Start/End: Original strand, 46428668 - 46428987
Alignment:
| Q |
14 |
ttttcttcaatctcttgttgatggcttggtcgaaggaatgatatattttacatgatcatcaattcataatcttaaaatgttgtggcttccctcacatcac |
113 |
Q |
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| T |
46428668 |
ttttcttcaatctcttgttgatggcttggtcgaaggaatgatatattttacatgatcatcaattcataatcttaaaatgttgtggcttccctcacatcac |
46428767 |
T |
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| Q |
114 |
atgcaaattgtgaaatggaaaggaatgcaattaaaatggagtctgttctgcactcttgatacccacagtaacaggcacagcaataaagttagtatagcat |
213 |
Q |
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| T |
46428768 |
atgcaaattgtgaa-tggaaaggaatgcaattaaaatggagtctgttctacactcttgatacccacagtaacaggcacagcaataaagttagtatagcat |
46428866 |
T |
|
| Q |
214 |
atattaattcaaaagctaactaggtaatgagatatgagcatgctgaaagagnnnnnnnngttttagttaacttttagaagtcccacat-ttgtatttcat |
312 |
Q |
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| T |
46428867 |
atattaattcaaaagctaactaggcaatgagatatgagcatgctgaaagagaaaaaaaagttttagttaacttttagaagtcccacatcgtgtatttcat |
46428966 |
T |
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| Q |
313 |
gaaagaaacaagtctttataa |
333 |
Q |
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|||||||| |||||||||||| |
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| T |
46428967 |
gaaagaaataagtctttataa |
46428987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 333
Target Start/End: Complemental strand, 46627487 - 46627426
Alignment:
| Q |
273 |
gttttagttaacttttagaagtcccacat-ttgtatttcatgaaagaaacaagtctttataa |
333 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||||||||| || ||| ||||| |
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| T |
46627487 |
gttttagttaacatttagaagtcccacatcgagtatttcatgaaagaaataattctatataa |
46627426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 333
Target Start/End: Original strand, 37147384 - 37147445
Alignment:
| Q |
273 |
gttttagttaacttttagaagtcccacatt-tgtatttcatgaaagaaacaagtctttataa |
333 |
Q |
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||||||||| || |||| ||||||||||| |||||||||| |||||||| ||||||||||| |
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| T |
37147384 |
gttttagtttacatttataagtcccacatcgtgtatttcataaaagaaactagtctttataa |
37147445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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