View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1984_high_4 (Length: 318)
Name: NF1984_high_4
Description: NF1984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1984_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 40 - 126
Target Start/End: Complemental strand, 5915484 - 5915398
Alignment:
| Q |
40 |
tgtaaattttgtatataaatattaccaaatcgtcctttgaatatatatgtgttcaattccaacattttatcttctaagataagttag |
126 |
Q |
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| T |
5915484 |
tgtaaattttgtatataaatattaccaaatcgtcctttgaatatatatgtgttcaattccaacattttatcttctaagataagttag |
5915398 |
T |
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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 5915333 - 5915273
Alignment:
| Q |
239 |
tatttttcatttagaaattgtaggtttacataacataacctgaaatataagtaaagcaatt |
299 |
Q |
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| T |
5915333 |
tatttttcatttagaaattgtaggtttacataacataacctgaaatataagtaaagcaatt |
5915273 |
T |
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