View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1984_high_6 (Length: 290)

Name: NF1984_high_6
Description: NF1984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1984_high_6
NF1984_high_6
[»] chr5 (4 HSPs)
chr5 (18-133)||(26440018-26440132)
chr5 (198-252)||(26440197-26440251)
chr5 (86-133)||(26296450-26296497)
chr5 (83-133)||(14148336-14148386)
[»] chr3 (2 HSPs)
chr3 (86-133)||(50662494-50662541)
chr3 (89-133)||(40892798-40892842)
[»] chr8 (2 HSPs)
chr8 (86-133)||(26491455-26491502)
chr8 (84-133)||(4366335-4366384)
[»] chr6 (1 HSPs)
chr6 (86-133)||(2656431-2656478)
[»] chr4 (2 HSPs)
chr4 (84-131)||(26194538-26194585)
chr4 (93-133)||(36860302-36860342)
[»] scaffold0191 (1 HSPs)
scaffold0191 (87-131)||(4544-4588)


Alignment Details
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 26440018 - 26440132
Alignment:
Q  18 atttgcttataacaaggaacatagggattgcactattaaaaaatgggaaatgttaacgagtgccctttgttaaagaattataaaatgaaatattatattg 117  Q
    ||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||  | ||     
T  26440018 atttgcttataacaaggaacatatggaatgtactattaaaaaatgggaaatgttaacgagtg-tctttgttaaggaattataaaatgaaatatcttttta 26440116  T
Q  118 gaaattttgtattcta 133  Q
    |||||| |||||||||    
T  26440117 gaaattgtgtattcta 26440132  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 26440197 - 26440251
Alignment:
Q  198 atctttactagtgccccggagacactgcctttaaaaaatttattgcgaaaattcc 252  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26440197 atcttaactagtgccccggagacactgcatttaaaaaatttattgcgaaaattcc 26440251  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 26296497 - 26296450
Alignment:
Q  86 gttaaagaattataaaatgaaatattatattggaaattttgtattcta 133  Q
    ||||||||||||||||| |||||||| ||||||||||| |||||||||    
T  26296497 gttaaagaattataaaaggaaatattgtattggaaattgtgtattcta 26296450  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 14148386 - 14148336
Alignment:
Q  83 tttgttaaagaattataaaatgaaatattatattggaaattttgtattcta 133  Q
    |||||||| ||||||||||| || ||||||| ||||||||| |||||||||    
T  14148386 tttgttaaggaattataaaaagacatattatcttggaaattgtgtattcta 14148336  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 50662541 - 50662494
Alignment:
Q  86 gttaaagaattataaaatgaaatattatattggaaattttgtattcta 133  Q
    ||||| |||||||||||| ||||||||||||||||||||| |||||||    
T  50662541 gttaaggaattataaaataaaatattatattggaaattttctattcta 50662494  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 40892798 - 40892842
Alignment:
Q  89 aaagaattataaaatgaaatattatattggaaattttgtattcta 133  Q
    |||||||||||||| |||||||| | ||||||||| |||||||||    
T  40892798 aaagaattataaaaggaaatattttcttggaaattgtgtattcta 40892842  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 26491455 - 26491502
Alignment:
Q  86 gttaaagaattataaaatgaaatattatattggaaattttgtattcta 133  Q
    ||||||||||||||||| |||||||| ||||||||||| ||| |||||    
T  26491455 gttaaagaattataaaaggaaatattgtattggaaattgtgtgttcta 26491502  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 4366384 - 4366335
Alignment:
Q  84 ttgttaaagaattataaaatgaaatattatattggaaattttgtattcta 133  Q
    ||||||| |||| ||||||||||||||||| ||| ||||| |||||||||    
T  4366384 ttgttaaggaatcataaaatgaaatattattttgaaaattatgtattcta 4366335  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 2656431 - 2656478
Alignment:
Q  86 gttaaagaattataaaatgaaatattatattggaaattttgtattcta 133  Q
    ||||| |||||||||||  ||||||||||||||||||| |||||||||    
T  2656431 gttaaggaattataaaagaaaatattatattggaaattgtgtattcta 2656478  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 26194538 - 26194585
Alignment:
Q  84 ttgttaaagaattataaaatgaaatattatattggaaattttgtattc 131  Q
    ||||||| |||||||||||||||||||||| ||| ||||| |||||||    
T  26194538 ttgttaaggaattataaaatgaaatattatcttgtaaattgtgtattc 26194585  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 36860302 - 36860342
Alignment:
Q  93 aattataaaatgaaatattatattggaaattttgtattcta 133  Q
    |||||||||| |||||||| ||||||||||| |||||||||    
T  36860302 aattataaaaagaaatattgtattggaaattgtgtattcta 36860342  T

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Target: scaffold0191 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 4544 - 4588
Alignment:
Q  87 ttaaagaattataaaatgaaatattatattggaaattttgtattc 131  Q
    ||||||||| ||||||||||||||| ||||| ||||| |||||||    
T  4544 ttaaagaataataaaatgaaatattgtattgaaaattgtgtattc 4588  T

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