View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1984_high_7 (Length: 279)
Name: NF1984_high_7
Description: NF1984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1984_high_7 |
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| [»] scaffold0495 (1 HSPs) |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: scaffold0495 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0495
Description:
Target: scaffold0495; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 50 - 239
Target Start/End: Original strand, 2483 - 2672
Alignment:
| Q |
50 |
atgtacatgcactcatttcaagggggtgcaacacttctcagtttgggcctaatatttatcctatataccatgtttgtatggtggcgcgatgttctacgtg |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2483 |
atgtacatgcactcatttcaagggggtgcaacacttctcagtttgggcctaatatttatcctatataccatgtttgtatggtggcgcgatgttctacgtg |
2582 |
T |
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| Q |
150 |
aatccacgttggaaggacatcataccaaagtagtacaattaggacctcgatatggttctattccgttcatcgtatcggaggttatgttcc |
239 |
Q |
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| T |
2583 |
aatccacgttggaaggacatcataccaaagtagtacaattaggacctcgatatggttctattccgttcatcgtatcggaggttatgttcc |
2672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 50 - 239
Target Start/End: Complemental strand, 37724 - 37535
Alignment:
| Q |
50 |
atgtacatgcactcatttcaagggggtgcaacacttctcagtttgggcctaatatttatcctatataccatgtttgtatggtggcgcgatgttctacgtg |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37724 |
atgtacatgcactcatttcaagggggtgcaacacttctcagtttgggcctaatatttatcctatataccatgtttgtatggtggcgcgatgttctacgtg |
37625 |
T |
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| Q |
150 |
aatccacgttggaaggacatcataccaaagtagtacaattaggacctcgatatggttctattccgttcatcgtatcggaggttatgttcc |
239 |
Q |
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| T |
37624 |
aatccacgttggaaggacatcataccaaagtagtacaattaggacctcgatatggttctattccgttcatcgtatcggaggttatgttcc |
37535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 50 - 239
Target Start/End: Original strand, 10225755 - 10225944
Alignment:
| Q |
50 |
atgtacatgcactcatttcaagggggtgcaacacttctcagtttgggcctaatatttatcctatataccatgtttgtatggtggcgcgatgttctacgtg |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10225755 |
atgtacatgcactcatttcaagggggtgcaacacttctcagtttgggcctaatatttatcctatataccatgtttgtatggtggcgcgatgttctacgtg |
10225854 |
T |
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| Q |
150 |
aatccacgttggaaggacatcataccaaagtagtacaattaggacctcgatatggttctattccgttcatcgtatcggaggttatgttcc |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10225855 |
aatccacgttggaaggacatcataccaaagtagtacaattaggacctcgatatggttctattccgttcatcgtatcggaggttatgttcc |
10225944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 14450186 - 14450234
Alignment:
| Q |
1 |
ctccttaaacaacccatttttatttcattctataactagttaaaaactt |
49 |
Q |
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| T |
14450186 |
ctccttaaacaacccatttttatttcattctataactagttaaaaactt |
14450234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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