View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1984_high_8 (Length: 268)
Name: NF1984_high_8
Description: NF1984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1984_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 43 - 250
Target Start/End: Complemental strand, 10284548 - 10284341
Alignment:
| Q |
43 |
caatctaaattgtagttgctacaaaattttctactagttagaatggacaaaaactaacacaattccattgtgtagagagtttcctatccaaaatggaaag |
142 |
Q |
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| T |
10284548 |
caatctaaattgtagttgcttcaaaattttctactagttagaatggacaaaaactaacacaattccattgtgtagagagtttcctatccaaaatggaaag |
10284449 |
T |
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| Q |
143 |
ggcttaaactttatctacagtagcaagtcatcacaaacagaaaatggtgtaacattagcaacagccacaacaaatctattcacaaatccaggatacaatc |
242 |
Q |
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| T |
10284448 |
ggcttaaactttatctacagtagcaagtcatcacaaacagaaaatggtgtaacattagcaacagccacaacaaatctattcacaaatccaggatacaatc |
10284349 |
T |
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| Q |
243 |
atatgatg |
250 |
Q |
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|||||||| |
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| T |
10284348 |
atatgatg |
10284341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 77 - 239
Target Start/End: Complemental strand, 10273272 - 10273110
Alignment:
| Q |
77 |
tagttagaatggacaaaaactaacacaattccattgtgtagagagtttcctatccaaaatggaaagggcttaaactttatctacagtagcaagtcatcac |
176 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| ||||| ||| |||||||| ||||| | ||||| |
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| T |
10273272 |
tagttagaatggacaaaaactaacacaattacattatgtagagagtttcctatccaaaatggcaaggccttaagcttcatctacagcagcaaattatcac |
10273173 |
T |
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| Q |
177 |
aaacagaaaatggtgtaacattagcaacagccacaacaaatctattcacaaatccaggataca |
239 |
Q |
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| T |
10273172 |
aaacaaaagggggtgtgacagcaggaacagccacagcaaatgtgttcagtcatccaggataca |
10273110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 77 - 236
Target Start/End: Complemental strand, 10265579 - 10265416
Alignment:
| Q |
77 |
tagttagaatggacaaaaactaacacaattccattgtgta----gagagtttcctatccaaaatggaaagggcttaaactttatctacagtagcaagtca |
172 |
Q |
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| T |
10265579 |
tagttagaatggacaaaaagtaacacaattccattatgtatgtagagagtttcctatccaaaatggcaaggccttaagcttcatctacagcagcaaatta |
10265480 |
T |
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| Q |
173 |
tcacaaacagaaaatggtgtaacattagcaacagccacaacaaatctattcacaaatccaggat |
236 |
Q |
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| T |
10265479 |
tcacaaacaaaagggggtgtgacagcaggaacagccacaacaaatgtgttcagaaatccaggat |
10265416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 240
Target Start/End: Complemental strand, 10243697 - 10243527
Alignment:
| Q |
70 |
tttctactagttagaatggacaaaaactaacacaattccattgtgtagagagtttcctatccaaaatggaaagggcttaaactttatctacagtagcaag |
169 |
Q |
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||||| ||||||||||| |||||| |||||| ||||||||| || ||||||||||||||||||||||| |||| ||||| ||| |||||||| ||||| |
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| T |
10243697 |
tttctgctagttagaatttacaaaagctaacaaaattccattatgcagagagtttcctatccaaaatggcaaggccttaagcttcatctacagcagcaaa |
10243598 |
T |
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| Q |
170 |
tcatcacaaacagaaaatggtgtaacattagcaacagccacaacaaatctattcacaaatccaggatacaa |
240 |
Q |
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||||||| | || ||||| ||| |||||||||||||| | ||| |||||| ||||||||||||||| |
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| T |
10243597 |
ctatcacaagctaaagggggtgtgacagtagcaacagccacagccaatgtattcagaaatccaggatacaa |
10243527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 10284766 - 10284732
Alignment:
| Q |
17 |
tgacacgtttgacgctagtagtaattcaatctaaa |
51 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
10284766 |
tgacacgtctgacgctagtagtaattcaatctaaa |
10284732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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