View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1984_low_15 (Length: 231)
Name: NF1984_low_15
Description: NF1984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1984_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 47121196 - 47120996
Alignment:
| Q |
18 |
gtatgcattcaccctatccaatcgaaacaaataagggacaggtgcatatgacgtgataaacagtttctaccaagaaagtgcttacagcattttgattgtc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47121196 |
gtatgcattcaccctatccaatcgaaacaaataagggacaggtgcatatgacgtgataaacagtttctaccaagaaagtgcttacagcattttgattgtc |
47121097 |
T |
|
| Q |
118 |
attatcggcactaaatacgtagtatataggcgccaagacctcgttcatgccttgcacataacaaattgcaggatttaacttcgcaaaaaggagaagaata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47121096 |
attatcggcactaaatacgtagtatataggcgccaagacctcgttcatgccttgcacataacaaattgcaggatttaacttcgcaaaaaggagaagaata |
47120997 |
T |
|
| Q |
218 |
t |
218 |
Q |
| |
|
| |
|
|
| T |
47120996 |
t |
47120996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University