View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1984_low_3 (Length: 341)
Name: NF1984_low_3
Description: NF1984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1984_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 9 - 315
Target Start/End: Complemental strand, 26440590 - 26440279
Alignment:
| Q |
9 |
tcgaagaatattaacaatatatcaaattttcataannnnnnnnnaatagataataaaaaatatttaagttcaaagttgtacattaacctacatgacagag |
108 |
Q |
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| T |
26440590 |
tcgatgaatattatcaatatatcaaattttcataatttttttt-aatagataataaaaaatatttaagttcaaagttgtacattgacatacgtgacaga- |
26440493 |
T |
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| Q |
109 |
tcaactggtcatataatatagaactgaaggaatatctttttacttgtttt---------tacctatagactattttgacgcg-cttttcaattgctagag |
198 |
Q |
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| T |
26440492 |
---agtg-tcacataatataaaactgaagaaatatcttttcatttgttttaaagcaccgtacctatagactattttgacgcgtcttttcaattgctagag |
26440397 |
T |
|
| Q |
199 |
tccaattcttaaaattgagtaaaatgnnnnnnnnn-cttttcaaagtaacattgagtaaattgttgacctttttgataaaaatataatgattaaaaaaca |
297 |
Q |
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| T |
26440396 |
tccaattctcaaaattgagcaaaatgtttttcttttcttttcaaagtaacattgagtaaattgttgacctttttgataaaaatataatgattaaaaaaca |
26440297 |
T |
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| Q |
298 |
taatggttaatgtgccag |
315 |
Q |
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| T |
26440296 |
taatgattaatgtgccag |
26440279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 26452422 - 26452365
Alignment:
| Q |
245 |
aacattgagtaaattgttgacctttttgataaaaatataatgattaaaaaacataatg |
302 |
Q |
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| T |
26452422 |
aacattgagtaaattgttgatctttttgataaaaacataatgattaaaaagcataatg |
26452365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 34278659 - 34278584
Alignment:
| Q |
53 |
aatagataataaaaaatatttaagttcaaagttgtacattaacctacatgacagagtcaact-ggtcatataatat |
127 |
Q |
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| T |
34278659 |
aatagattattaaatatatttaagtttaaaattgtacattgacatacacgacagagtcaactaggtcacataatat |
34278584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 20651582 - 20651642
Alignment:
| Q |
54 |
atagataataaaaaatatttaagttcaaagttgtacattaacctacatgacagagtcaact |
114 |
Q |
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| T |
20651582 |
atagattattaaaaatatttaagttcaaaattgtgcattgacatacgtgacagagtcaact |
20651642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 14802848 - 14802786
Alignment:
| Q |
68 |
atatttaagttcaaagttgtacattaacctacatgacagagtcaact-ggtcatataatatag |
129 |
Q |
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| T |
14802848 |
atatttaagttcaaatatgtgcattgacatacttgacagagtcaactaggtcatataatatag |
14802786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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