View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19850_high_1 (Length: 452)
Name: NF19850_high_1
Description: NF19850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19850_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 443
Target Start/End: Complemental strand, 10340378 - 10339952
Alignment:
| Q |
17 |
acaactgtagtcggagacgtagacacaattattcaaactccatgatcaaatatcgtgttgttctctgtttgtgtttttcacatccttttacttttgaact |
116 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10340378 |
acaactgtagtcggagacgtagacacaattgttaaaactccatgatcaaatatcgtgttattctctgtttgtgtttttcacatccttttacttttgaact |
10340279 |
T |
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| Q |
117 |
agataactattctaacacagtagtttcaaaggcctcaaaataaaccatagttttgtttgtgggataaagggtactcaagttgcaatcttggacttcttgt |
216 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10340278 |
agataactgttctaacacagtagtttcaaaggcctcaaaataaaccacagttttgtttgtgggataaagggtactcaagttgcaatcttggacttcttgt |
10340179 |
T |
|
| Q |
217 |
gcatttttcgtgctgcttatcatgcagcatataccttattttcaggcagttgaannnnnnnnnattacaatgaattttatgcaaagtagttctaaataga |
316 |
Q |
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| T |
10340178 |
gcaattttcgtgcttcttatcatgcagcatataccttattttcaggcagttgaatttttttttattacaatgaattttatgcaaagtagttctaaataga |
10340079 |
T |
|
| Q |
317 |
atttgtaactagtatttacagaatttaattatgcactgatagtccaaaactgtttnnnnnnnnnnnnntattatacatccaaccatgtcataaagagttg |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10340078 |
atttgtaactagtatttacagaatttaattatgcactgatagtccaaaactgtttaaaaaaaaataaatattatacatccaaccatgtcataaagagttg |
10339979 |
T |
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| Q |
417 |
atttcattcaaagagcttcattcatct |
443 |
Q |
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| T |
10339978 |
atttcattcaaagagcttcattcatct |
10339952 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 28026992 - 28026908
Alignment:
| Q |
31 |
agacgtagacacaattattcaaactccatgatcaaatatcgtgttgttctctgtttgtgtttttcacatccttttacttttgaact |
116 |
Q |
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| T |
28026992 |
agacgtagccacaattggccgaactccacgatcaaatatcttgt-gttctctatttgtgtttttcgtatctttttacttttgaact |
28026908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 11319430 - 11319526
Alignment:
| Q |
21 |
ctgtagtcggagacgtagacacaattattcaaactccatgatcaaatatcgtgttgttctctgtttgtgtttttcacatccttttacttttgaactag |
118 |
Q |
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||||||| |||| ||||| |||||||| |||||| ||||||||| |||||| ||||| || ||||||||||| ||| |||||||||||||||| |
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| T |
11319430 |
ctgtagttggaggcgtaggcacaattagctgaactccgtgatcaaatctcgtgt-gttctttgcttgtgtttttcgtatctgtttacttttgaactag |
11319526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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