View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19850_low_3 (Length: 368)
Name: NF19850_low_3
Description: NF19850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19850_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 45974060 - 45974411
Alignment:
| Q |
1 |
ggcattgactattttgcaactctccaacccattacaagttaaatcaacagtgcacaatgtcacaagttcacaaccaaccacattacatcaccatcacatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45974060 |
ggcattgactattttgcaactctccaacccattacaagttaaatcaacagtgcacaatgtcacaagttcacaaccaaccacattacatcaccatcacatt |
45974159 |
T |
|
| Q |
101 |
cacgttttctctgtgtttttcagttaccagtacctccattattattagcactatagcatatcacatttcctctttatcggaaaaccatatcccgctttaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45974160 |
cacgttttctctgtgtttttcagttaccagtacctccattattattagcactatagcatatcacatttcctctttatcggaaaaccatatcccgctttaa |
45974259 |
T |
|
| Q |
201 |
acatcgcaactacgcgattatacttatcaatctgtcttctaagtttcttaagagtaaaatacaattcagcttccaactatatattatgcataataattag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45974260 |
acatcgcaactacgcgattatacttatcaatctgtcttctaagtttcttaagagtaaaatacaattcagcttccaactatatattatgcataataattag |
45974359 |
T |
|
| Q |
301 |
ttcaagtgctgttatttgattgttgcaataagagatttgcatgcgttgagga |
352 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45974360 |
ttgaagtgctgttatttgattgttgcaataagagatttgcatgcgttgagga |
45974411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University