View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19850_low_4 (Length: 359)
Name: NF19850_low_4
Description: NF19850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19850_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 351
Target Start/End: Complemental strand, 33944177 - 33943843
Alignment:
| Q |
17 |
atagtgacacaaagaaaagagaaaatgctaacnnnnnnnngctcataactaaacccataagtttttctaattttttgagtcaaggtatgtaagtttgttg |
116 |
Q |
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| T |
33944177 |
atagtgacacaaagaaaagagaaaatgctaacaaaaaaaagctcataactaaacccataagtttttctaattttttgagtcaaggtatgtaagtttgttg |
33944078 |
T |
|
| Q |
117 |
gtctctttgatgagttagttcttcagttaatgataagtgttgtggccattgattttttaggcttttgcatttaagttgtagaaaaggatatttgaatggt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33944077 |
gtctctttgatgagttagttcttcagttaatgataagtgttgtggccattgattttttaggcttttgcatttaagttgtagaaaaggatatttgaatggt |
33943978 |
T |
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| Q |
217 |
tattgggcaaaaactataaaatggttaccgggtgggttttcaaaaaatgtgttcattctttagtcttgatttatatgtttgaattgattagaatctttgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33943977 |
tattgggcaaaaactataaaatggttaccgggtgggttttcaaaaaatgtgttcattctttagtcttgatttatatgtttgaattgattagaatctttgt |
33943878 |
T |
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| Q |
317 |
gaggatgatactctttggaattggttcatattctt |
351 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
33943877 |
gaggatgatactctttggaattggttcattttctt |
33943843 |
T |
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