View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19850_low_5 (Length: 319)
Name: NF19850_low_5
Description: NF19850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19850_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 43 - 304
Target Start/End: Original strand, 38119972 - 38120223
Alignment:
| Q |
43 |
aactatgcaaatcctgaagaacgaattccaaaacaaatcaaaacgaattcatgaacatttttggtacaaatcaagactaattcatcaaaatcaaaacgaa |
142 |
Q |
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| T |
38119972 |
aactatgcaaatcctgaagaacgaattccaaaacaaat----------tcatgaacgtttttggtacaaatcaagactaattcatcaaaatcaaaacgaa |
38120061 |
T |
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| Q |
143 |
ctccaatcaatcgcgttcttcttcttcgttcttcaaaagttgagatctgggttacaatgaacaaatcaatttgcctaaaaagtgttaccactggtcaaac |
242 |
Q |
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| T |
38120062 |
ctccaatcaatcgcgttcttcttcttcgttcttcaaaaattgagatctgggttacaatgaacaagtgaatttgcctaaaaagtgttaccactggtcaagc |
38120161 |
T |
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| Q |
243 |
aatcctatttaagtaacttcagagagaaaaattatattgtatctcattattaaagtacatag |
304 |
Q |
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| T |
38120162 |
aatcctatttaagtaacttcagagagaaaaattatattgtatctcattattaaagtacatag |
38120223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 40 - 152
Target Start/End: Original strand, 2377158 - 2377270
Alignment:
| Q |
40 |
ttaaactatgcaaatcctgaagaacgaattccaaaacaaatcaaaacgaattcatgaacatttttggtacaaatcaagactaattcatcaaaatcaaaac |
139 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||| ||||||||||||| || ||||||||||||||||| | |||||||||||||| ||||| |
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| T |
2377158 |
ttaaactatgcaaatctagaagaacgatttccaaaacaaatgaaaacgaattcattaaagtttttggtacaaatcaaaattaattcatcaaaattaaaac |
2377257 |
T |
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| Q |
140 |
gaactccaatcaa |
152 |
Q |
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| T |
2377258 |
gaactccaatcaa |
2377270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 40 - 206
Target Start/End: Original strand, 1560299 - 1560465
Alignment:
| Q |
40 |
ttaaactatgcaaatcctgaagaacgaattccaaaacaaatcaaaacgaattcatgaacatttttggtacaaatcaagactaattcatcaaaatcaaaac |
139 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
1560299 |
ttaaactatgcaaatcctgaagaacgaattccaaaacaaatcaaaacgaattcatgaacgtttttggtacaaatcaaaactaattcatcaaaatcaaaac |
1560398 |
T |
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| Q |
140 |
gaactccaatcaatcgcgttcttcttcttcgttcttcaaaagttgagatctgggttacaatgaacaa |
206 |
Q |
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| T |
1560399 |
gaactccaatcaatcggattcttcttcttcgttcttcaaaagttgagatatgggttacaaagaacaa |
1560465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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