View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19850_low_6 (Length: 291)

Name: NF19850_low_6
Description: NF19850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19850_low_6
NF19850_low_6
[»] chr7 (1 HSPs)
chr7 (12-291)||(33943576-33943860)


Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 33943860 - 33943576
Alignment:
Q  12 gaattggttcattttctttcgagttttagtaaatatcctctgagtggacaagaattcacaaatattctttcaaaactgagacttcacacttgattggtgg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33943860 gaattggttcattttctttcgagttttagtaaatatcctctgagtggacaagaattcacaaatattctttcaaaactgagacttcacacttgattggtgg 33943761  T
Q  112 taggagtgttaatatcatttcaannnnnnnaaacatgtcatctacatcaaaccaaaccgcgtataattttatatttggagatgatgttcttttttgcttt 211  Q
    |||||||||||||||||||||||       |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33943760 taggagtgttaatatcatttcaatttttttaaacgtgtcatctacatcaaaccaaaccgcgtataattttatatttggagatgatgttcttttttgcttt 33943661  T
Q  212 aaacacagttcaaaatgcacaacaaacacttctaattagtggc-----atatgatatgtttcaagatgggttttattgttcatga 291  Q
    |||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||    
T  33943660 aaacacagttcaaaatgcacaacaaacacttctaattagtggcatataatatgatatgtttcaagatgggttttattgttcatga 33943576  T

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