View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19850_low_8 (Length: 233)
Name: NF19850_low_8
Description: NF19850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19850_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 4765580 - 4765364
Alignment:
| Q |
1 |
ggataggattattcccttacatatatataccataagagtaagatgaaataaaccagaagcataaatggtgtcatatgtacctcaataacaaccctgacaa |
100 |
Q |
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| T |
4765580 |
ggataggattattcccttacatatatataccataagagtaagatgaaataaaccagaagcataaatggtgtcatatgtacctcaataacaaccctgacaa |
4765481 |
T |
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| Q |
101 |
ctcaaaggttgtcatgtgttagatgtatattccctacctaaaatgttgtttctcttcattaagaatattttttctgacattccataactcactttttgct |
200 |
Q |
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| T |
4765480 |
ctcaaaggttgtcatgtgttagatgtatattccctacctaaaatgttttttctcttcattaagaatattttttctgacattccataactcactttttgct |
4765381 |
T |
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| Q |
201 |
atagcatattatggatt |
217 |
Q |
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||| ||||||||||||| |
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| T |
4765380 |
ataccatattatggatt |
4765364 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 196
Target Start/End: Original strand, 35780768 - 35780851
Alignment:
| Q |
111 |
gtcatgtgttagatgtatattccctacctaaaatgttgtttctcttcattaagaat-attttttctgacattccataactcactttt |
196 |
Q |
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|||||||||||||||| |||||||||||| |||| |||| |||| ||||| || ||||||| ||||||||||| ||||| |||| |
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| T |
35780768 |
gtcatgtgttagatgtgtattccctaccttaaattgtgttgctct---ttaagtataattttttttgacattccattactcaatttt |
35780851 |
T |
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