View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19851_high_1 (Length: 1118)
Name: NF19851_high_1
Description: NF19851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19851_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 994; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 994; E-Value: 0
Query Start/End: Original strand, 19 - 1036
Target Start/End: Complemental strand, 39167232 - 39166215
Alignment:
| Q |
19 |
cctaaacccgagccttttaacaaggcatgtatctgtttcatactttctctgtttcaggcaaaataaaagccaaaactgtaatcaaaagaacactagtcgg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39167232 |
cctaaacccgagccttttaacaaggcatgtatctgtttcatactttctctgtttcaggcaaaataaaagccaaaactgtaatcaaaagaacactagtcgg |
39167133 |
T |
|
| Q |
119 |
taattgaattcacatgttttttctctgctttccttttgattttatcattccagctcgatgatcgtgctgttgattctgtgatgaaagaactttttaagaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39167132 |
taattgaattcacatgttttttctctgctttccttatgattttatcattccagctcgatgatcgtgctgttgattctgtgatgaaagaactttttaagaa |
39167033 |
T |
|
| Q |
219 |
ttacaaaacgtggtgcaaattcttgggacggaagcatagtttgcggtgagatataactatatcagcatcaacgaacatttgcgcttttatcttttgcctt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39167032 |
ttacaaaacgtggtgcaaattcttgggacggaagcatagtttgcggtgagatataactatatcagcatcaacgaacatttgcgcttttatcttttgcctt |
39166933 |
T |
|
| Q |
319 |
atgaatttaaagaataaaatctgaaattgtttatggttaaaagtgtttatgctgttcttttacagactgcctcaaggtcagccagacatacagcagagga |
418 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166932 |
atgaattcaaagaataaaatctgaaattgtttatggttaaaagtgtttatgctgttcttttacagactgcctcaaggtcagccagacatacagcagagga |
39166833 |
T |
|
| Q |
419 |
agttgctttatatgggattgtatcttctcatttggggtgaagcgtcaaatgttcgattcatgccagagtgtctgtgctatatatttcacaatgtgagtac |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166832 |
agttgctttatatgggattgtatcttctcatttggggtgaagcgtcaaatgttcgattcatgccagagtgtctgtgctatatatttcacaatgtgagtac |
39166733 |
T |
|
| Q |
519 |
aaatataccacatgtttcactatatcttgtgccacaatgtcttcgcaattgaaatataatggtcttctctttaatctttttaaatttattagtcatttgc |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39166732 |
aaatataccacatgtttcactatatcttgtgccacaatgtctttgcaattgaaatataatggtcttctctttaatctttttaaatttattagtcatttgc |
39166633 |
T |
|
| Q |
619 |
acatttgctaataatggccaagtatgacatcagatggcatatgaactgcatggtttattggctggaaatgtcagcattgtcactggtgaaaatatcaagc |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166632 |
acatttgctaataatggccaagtatgacatcagatggcatatgaactgcatggtttattggctggaaatgtcagcattgtcactggtgaaaatatcaagc |
39166533 |
T |
|
| Q |
719 |
cttcttatggtggagatgacgaggcattcctacgaaaggttatcacacccctataccgagtaattgagaaggtgtgattttatctcacatggacattgtt |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39166532 |
cttcttatggtggagatgacgaggcattcctacgaaaggttatcacacccatataccgagtaattgagaaggtgtgattttatttcacatggacattgtt |
39166433 |
T |
|
| Q |
819 |
gtaatatctcaggtgcctatgttccctgtaatgatttgcaaaattgtaataaccatgttgatcattccaggaatctaagaaaagcagaaatggaaaggct |
918 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166432 |
gtaatatctcaggtgcctatgttccctgtaatgatttgcaaaattgtaataaccatgttgatcattccaggaatctaagaaaagcagaaatggaaaggct |
39166333 |
T |
|
| Q |
919 |
gcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattgctaaaattgacttggttcgtttcattt |
1018 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166332 |
tcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattgctaaaattgacttggttcgtttcattt |
39166233 |
T |
|
| Q |
1019 |
cgtcattcattacttgac |
1036 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
39166232 |
cgtcattcattacttgac |
39166215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 1061 - 1107
Target Start/End: Complemental strand, 39166190 - 39166144
Alignment:
| Q |
1061 |
caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg |
1107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166190 |
caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg |
39166144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 7e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 903 - 1036
Target Start/End: Complemental strand, 5539224 - 5539091
Alignment:
| Q |
903 |
cagaaatggaaaggctgcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattgctaaaattgac |
1002 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5539224 |
cagaaatggaaaggcttcacactcagcatggtgcaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattactaaaattgac |
5539125 |
T |
|
| Q |
1003 |
ttggttcgtttcatttcgtcattcattacttgac |
1036 |
Q |
| |
|
|||||| |||||||||| |||| ||||||||||| |
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|
| T |
5539124 |
ttggtttgtttcatttcatcatgcattacttgac |
5539091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1061 - 1107
Target Start/End: Complemental strand, 5539066 - 5539020
Alignment:
| Q |
1061 |
caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg |
1107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
5539066 |
caggtcacttgattgcttttctcttggatggcctataggtgatgatg |
5539020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 2e-39; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 380 - 515
Target Start/End: Complemental strand, 43964353 - 43964218
Alignment:
| Q |
380 |
acagactgcctcaaggtcagccagacatacagcagaggaagttgctttatatgggattgtatcttctcatttggggtgaagcgtcaaatgttcgattcat |
479 |
Q |
| |
|
||||||| ||||||||||||| ||| ||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||| |||| ||||| |
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|
| T |
43964353 |
acagacttcctcaaggtcagcaagagatacaacagagaaagttgctttatatgggcttgtatcttctcatatggggtgaagcgtccaatcttcgcttcat |
43964254 |
T |
|
| Q |
480 |
gccagagtgtctgtgctatatatttcacaatgtgag |
515 |
Q |
| |
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|||||||||| | ||||| ||||||||||||||||| |
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| T |
43964253 |
gccagagtgtatatgctacatatttcacaatgtgag |
43964218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 648 - 761
Target Start/End: Complemental strand, 43964103 - 43963990
Alignment:
| Q |
648 |
tcagatggcatatgaactgcatggtttattggctggaaatgtcagcattgtcactggtgaaaatatcaagccttcttatggtggagatgacgaggcattc |
747 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||| |
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|
| T |
43964103 |
tcagatggcatatgaacttcatggtttattggctggaaatgtcagcattgttactggtgaaaatatcaaaccttcttatggtggtgatgatgaggcattc |
43964004 |
T |
|
| Q |
748 |
ctacgaaaggttat |
761 |
Q |
| |
|
| || |||||||| |
|
|
| T |
43964003 |
ttgcgcaaggttat |
43963990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 886 - 973
Target Start/End: Complemental strand, 43963868 - 43963781
Alignment:
| Q |
886 |
caggaatctaagaaaagcagaaatggaaaggctgcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttt |
973 |
Q |
| |
|
|||||| || |||||||||||||||||| |||| | |||||||| |||| ||| || |||||||||||||||||||| ||||| |||| |
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|
| T |
43963868 |
caggaagctgagaaaagcagaaatggaatggctcctcactcagcctggtgcaattacgatgatctaaatgagtatttctggttagttt |
43963781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 43964521 - 43964464
Alignment:
| Q |
211 |
tttaagaattacaaaacgtggtgcaaattcttgggacggaagcatagtttgcggtgag |
268 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| || |||||||| ||||||| |
|
|
| T |
43964521 |
tttaagaattacaaaacatggtgcaaatttttgggacgaaaacatagtttacggtgag |
43964464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1061 - 1107
Target Start/End: Complemental strand, 43963681 - 43963635
Alignment:
| Q |
1061 |
caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg |
1107 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43963681 |
caggacacctgattgcttttctcttggatggcccatgcgtgatgatg |
43963635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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