View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19851_high_16 (Length: 229)
Name: NF19851_high_16
Description: NF19851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19851_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 28475041 - 28475237
Alignment:
| Q |
17 |
cacagaggtttgaatcctttatcaaaaactaggatttatgtttcataggttatggaatatgtatgctacattttattgactgtgactaatacaaaagttg |
116 |
Q |
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| T |
28475041 |
cacagaggtttgaatcctttatcaaaaactaggatttatgtttcataggttatggaatatgtatggtacatttaattgactgtgactaatacaaaagttg |
28475140 |
T |
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| Q |
117 |
ttttttctttgtccatgatgttcttgatttgactgtttgacttataacctaaagagacagagtttaaatctcctcgtagatagttgtaaaatgatatt |
214 |
Q |
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| T |
28475141 |
-tttttctttgtccatgatgtgcttgatttgactgtttgacttataacctaaagggacagagtttaaatctcctcgtagatagttgtaaaatgatatt |
28475237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 28466620 - 28466710
Alignment:
| Q |
17 |
cacagaggtttgaatcctttatcaaaaactaggatttatgtttcataggttatggaatatgtatgctacattttattgactgtgactaatac |
108 |
Q |
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|||||||||||||||||||||| ||| |||||| |||||||| ||| ||||||||||| | ||| |||||||||||||||||||||||||| |
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| T |
28466620 |
cacagaggtttgaatcctttattaaac-ctaggaattatgtttgatatgttatggaataagcatggtacattttattgactgtgactaatac |
28466710 |
T |
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