View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19851_high_18 (Length: 214)
Name: NF19851_high_18
Description: NF19851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19851_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 13887291 - 13887090
Alignment:
| Q |
1 |
tcaacatcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatcgatggaaaccgatttcttcaacgatgaatctaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13887291 |
tcaacatcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatcgatggaaaccgatttcttcaacgatgaatctaaga |
13887192 |
T |
|
| Q |
101 |
caggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaatttcctaaactttgttgaatgaaactcgatactcgctgttttcctttgctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
13887191 |
caggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaatttcctaaactttgttgaatgaaactcgatactcgctgttttcctttgttt |
13887092 |
T |
|
| Q |
201 |
ct |
202 |
Q |
| |
|
|| |
|
|
| T |
13887091 |
ct |
13887090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 13897913 - 13898114
Alignment:
| Q |
1 |
tcaacatcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatcgatggaaaccgatttcttcaacgatgaatctaaga |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| ||||||||| ||||| ||||||| |
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|
| T |
13897913 |
tcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatctattgcaacatttttcttcaatgatgattctaaga |
13898012 |
T |
|
| Q |
101 |
caggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaatttcctaaactttgttgaatgaaactcgatactcgctgttttcctttgctt |
200 |
Q |
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|
||||||||||||||||||||||||||||||| | ||| | | ||||||| |||||||| ||||| ||||||||||||||||||||| |||||||||| || |
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| T |
13898013 |
caggtatgagcctattgttcacaagctcaaaaattgacttaattgttaacttcctaaaatttgtcgaatgaaactcgatactcgctattttcctttgttt |
13898112 |
T |
|
| Q |
201 |
ct |
202 |
Q |
| |
|
|| |
|
|
| T |
13898113 |
ct |
13898114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 1034970 - 1035171
Alignment:
| Q |
1 |
tcaacatcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatcgatggaaaccgatttcttcaacgatgaatctaaga |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| ||||||||| ||| | ||||||| |
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|
| T |
1034970 |
tcaacaccaaaagctatcatacaaacattatcaaaagttagtctcagcaaaatatcttgaagatctatggcaacatttttcttcaatgataattctaaga |
1035069 |
T |
|
| Q |
101 |
caggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaatttcctaaactttgttgaatgaaactcgatactcgctgttttcctttgctt |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||| | ||| ||| ||||||| || ||||| ||||| ||||||||||||||||| ||| |||||||||| || |
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|
| T |
1035070 |
ctggtatgagcctattgttcacaagctcaaaaattgactcatttgttaactttctaaaatttgtcgaatgaaactcgatactagctattttcctttgttt |
1035169 |
T |
|
| Q |
201 |
ct |
202 |
Q |
| |
|
|| |
|
|
| T |
1035170 |
ct |
1035171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 28667250 - 28667446
Alignment:
| Q |
1 |
tcaacatcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatcgatggaaaccgatttcttcaac-gatgaatctaag |
99 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||| || | ||| ||||||||||| || | || ||| | |||| ||| |||||| |
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|
| T |
28667250 |
tcaacaccaaaagctatcatacaaacattgtcaaaagttagtcttaaaagaatgtcttgaagatctgtgacagcccttttat-caactgattcatctaaa |
28667348 |
T |
|
| Q |
100 |
acaggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaatttcctaaactttgttgaatgaaactcgatactcgctgttttcctttg |
197 |
Q |
| |
|
||||||| ||||| | |||||||||||||| |||||||||||||| || || ||||| || |||||||||||||| ||||||||||| ||||| |
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| T |
28667349 |
acaggtaaaagccttgaatgaacaagctcaaacaaagaatcagttgttaaatttctgaacttggtcgaatgaaactcgatgctcgctgtttttctttg |
28667446 |
T |
|
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