View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19851_high_9 (Length: 311)
Name: NF19851_high_9
Description: NF19851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19851_high_9 |
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| [»] scaffold0045 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 10377916 - 10378107
Alignment:
| Q |
18 |
ttaagcgcacggtcaacagaaggtgacatatcatgaggtgtgttgctaatgaacaatccatataagcccaaaccaaaaatcaacataacagtaccagcaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10377916 |
ttaagcgcacggtcaacagaaggtgacatatcatgaggtgtgttgctaatgaacaatccatataagcccaaaccaaaaatcaacataacagtaccagcaa |
10378015 |
T |
|
| Q |
118 |
gataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatttggac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378016 |
gataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatttggac |
10378107 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 26 - 204
Target Start/End: Complemental strand, 10075304 - 10075126
Alignment:
| Q |
26 |
acggtcaacagaaggtgacatatcatgaggtgtgttgctaatgaacaatccatataagcccaaaccaaaaatcaacataacagtaccagcaagataaaca |
125 |
Q |
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|||||| |||||| |||| || ||||||||| ||||||| || |||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
10075304 |
acggtccacagaacgtgaaatgtcatgaggtatgttgctgataaacaatccatataaacccattataaaaatcaacataacagtaccagcaagataaaca |
10075205 |
T |
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| Q |
126 |
tctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatt |
204 |
Q |
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||||||||| | |||||||||||||||||| |||| | ||||||||||| |||||||||||||| ||||||||||||| |
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| T |
10075204 |
tctgcagcagcaagattcatttattttattgtcataaagaaggctaaatgcaagtaaaaactaaatcttatcagaaatt |
10075126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 10136861 - 10136676
Alignment:
| Q |
24 |
gcacggtcaacagaaggtgacatatcatgaggtgtgttgctaatgaacaatccatataagcccaaaccaaaaatcaacataacagtaccagcaagataaa |
123 |
Q |
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|||||||| |||||||||||||| |||||||| | |||| | || ||||||||||||| | || ||||||||||||||||| |||||||||||||||| |
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| T |
10136861 |
gcacggtccacagaaggtgacatgtcatgaggcgcgttggtgataaacaatccatatatacgcattccaaaaatcaacataacggtaccagcaagataaa |
10136762 |
T |
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| Q |
124 |
catctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatttggac |
209 |
Q |
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||||||||||| | |||||||||||||||||| |||| | |||| | ||||||||||||||||||| | |||||||||||||||| |
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| T |
10136761 |
catctgcagcagcaagattcatttattttattgtcataaagaaggatgaatgtaagtaaaaactaaatcatatcagaaatttggac |
10136676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 76 - 209
Target Start/End: Original strand, 10365502 - 10365635
Alignment:
| Q |
76 |
catataagcccaaaccaaaaatcaacataacagtaccagcaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatg |
175 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||| ||| ||| |||||| ||||||||||| |
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| T |
10365502 |
catataagcccataccaaaaatcaacataacagtaccagcaagataaacatctgcagctacaagattcatttaattttttgtcatagagaaggctaaatg |
10365601 |
T |
|
| Q |
176 |
taagtaaaaactaaaccttatcagaaatttggac |
209 |
Q |
| |
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| T |
10365602 |
tcagtaaaaactaaatcttatcagaaatttggac |
10365635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 42 - 209
Target Start/End: Complemental strand, 10134208 - 10134041
Alignment:
| Q |
42 |
gacatatcatgaggtgtgttgctaatgaacaatccatataagcccaaaccaaaaatcaacataacagtaccagcaagataaacatctgcagcaataggat |
141 |
Q |
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||||| ||||||||||||||||| || ||||||||||| ||| || || ||||||||||||| |||||||||||||||||||||||||||| | || |
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| T |
10134208 |
gacatgtcatgaggtgtgttgctgataaacaatccataaaagaacattccgaaaatcaacataatggtaccagcaagataaacatctgcagcaacaagac |
10134109 |
T |
|
| Q |
142 |
tcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatttggac |
209 |
Q |
| |
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||||||||||||||| |||| | |||||||||||| ||| ||||||||| |||||||||||||||||| |
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| T |
10134108 |
tcatttattttattgtcataaagaaggctaaatgtcagtcaaaactaaatcttatcagaaatttggac |
10134041 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 10102305 - 10102219
Alignment:
| Q |
119 |
ataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaattt |
205 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| |||| | |||||||||||||||||||||||||| |||||||||||||| |
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| T |
10102305 |
ataaacatctgcagcagcaagattcatttattttattgtcataaagaaggctaaatgtaagtaaaaactaaagcttatcagaaattt |
10102219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 10213228 - 10213142
Alignment:
| Q |
119 |
ataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaattt |
205 |
Q |
| |
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|||||||||||||||| | |||||||||||||||||| |||| | |||||||||||||||||||||||||| |||||||||||||| |
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| T |
10213228 |
ataaacatctgcagcagcaagattcatttattttattgtcataaagaaggctaaatgtaagtaaaaactaaagcttatcagaaattt |
10213142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 209
Target Start/End: Complemental strand, 10221353 - 10221242
Alignment:
| Q |
98 |
caacataacagtaccagcaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatc |
197 |
Q |
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|||||||| ||||| ||||||||||||| ||||||| | | ||||||||||||| || |||| | || ||||||||||||||||||||||| |||||| |
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| T |
10221353 |
caacataagagtactggcaagataaacatatgcagcagcaagtttcatttattttactgtcataaagaaagctaaatgtaagtaaaaactaaatcttatc |
10221254 |
T |
|
| Q |
198 |
agaaatttggac |
209 |
Q |
| |
|
|||||||||||| |
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| T |
10221253 |
agaaatttggac |
10221242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 10378160 - 10378200
Alignment:
| Q |
262 |
ttattttcatgttctttgtttagataatgatggagaataat |
302 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378160 |
ttattttcatgttctttgtttagataatgatggagaataat |
10378200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 10221406 - 10221351
Alignment:
| Q |
18 |
ttaagcgcacggtcaacagaaggtgacatatcatgaggtgtgttgctaatgaacaa |
73 |
Q |
| |
|
||||| |||||||| ||||||| ||||| |||||||||||||||| | |||||||| |
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|
| T |
10221406 |
ttaagggcacggtcgacagaagctgacacatcatgaggtgtgttgttgatgaacaa |
10221351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 10102377 - 10102324
Alignment:
| Q |
26 |
acggtcaacagaaggtgacatatcatgaggtgtgttgctaatgaacaatccata |
79 |
Q |
| |
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|||||| |||||||||||||| |||||||| | |||||| || ||||||||||| |
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| T |
10102377 |
acggtccacagaaggtgacatgtcatgaggcgcgttgctgataaacaatccata |
10102324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 10213300 - 10213247
Alignment:
| Q |
26 |
acggtcaacagaaggtgacatatcatgaggtgtgttgctaatgaacaatccata |
79 |
Q |
| |
|
|||||| |||||||||||||| |||||||| | |||||| || ||||||||||| |
|
|
| T |
10213300 |
acggtccacagaaggtgacatgtcatgaggcgcgttgctgataaacaatccata |
10213247 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 25793737 - 25793598
Alignment:
| Q |
18 |
ttaagcgcacggtcaacagaaggtgacatatcatgaggtgtgttgctaatgaacaatccatataagcccaaaccaaaaatcaacataacagtaccagcaa |
117 |
Q |
| |
|
||||| |||||||| |||| |||| || |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25793737 |
ttaagggcacggtcgacagcaggttgcacatcatgaggtgtgttgctgatgaacaatccatataagcccatgccaaaaatcaacataacagtaccagcaa |
25793638 |
T |
|
| Q |
118 |
gataaacatctgcagcaataggattcatttattttattga |
157 |
Q |
| |
|
||||||||||||||||| | ||||||| |||||||||| |
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|
| T |
25793637 |
gataaacatctgcagcagaaagattcatacattttattga |
25793598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 90 - 209
Target Start/End: Complemental strand, 85873 - 85754
Alignment:
| Q |
90 |
ccaaaaatcaacataacagtaccagcaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaa |
189 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||| | |||||||||||||||||| |||| | |||| | |||||||||||||||||| |
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|
| T |
85873 |
ccaaaaatcaacataacggtaccagcaagataaacatttgcagcagcaagattcatttattttattgtcataaagaaggatgaatgtaagtaaaaactaa |
85774 |
T |
|
| Q |
190 |
accttatcagaaatttggac |
209 |
Q |
| |
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| |||||||||||||||||| |
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| T |
85773 |
atcttatcagaaatttggac |
85754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 209
Target Start/End: Complemental strand, 26816711 - 26816600
Alignment:
| Q |
98 |
caacataacagtaccagcaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatc |
197 |
Q |
| |
|
|||||||| ||||| ||||||||||||| ||||||| | | ||||||||||||| || |||| | || ||||||||||||||||||||||| |||||| |
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|
| T |
26816711 |
caacataagagtactggcaagataaacatatgcagcagcaagtttcatttattttactgtcataaagaaagctaaatgtaagtaaaaactaaatcttatc |
26816612 |
T |
|
| Q |
198 |
agaaatttggac |
209 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26816611 |
agaaatttggac |
26816600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 26816764 - 26816709
Alignment:
| Q |
18 |
ttaagcgcacggtcaacagaaggtgacatatcatgaggtgtgttgctaatgaacaa |
73 |
Q |
| |
|
||||| |||||||| ||||||| ||||| |||||||||||||||| | |||||||| |
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|
| T |
26816764 |
ttaagggcacggtcgacagaagctgacacatcatgaggtgtgttgttgatgaacaa |
26816709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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