View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19851_low_12 (Length: 250)
Name: NF19851_low_12
Description: NF19851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19851_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 13887087 - 13886849
Alignment:
| Q |
1 |
catgtttcgttatctacagcgaaaataccgtctccaagtaaatcagaaactgtgtctttggagaagtttcctttagggaaaatattgaactttgttttga |
100 |
Q |
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| T |
13887087 |
catgtttcgttatctacagcgaaaataccgtctccaagtaaatcagaaactgtgtctttgaagaagtttcctttagggaaaatattgaactttgttttga |
13886988 |
T |
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| Q |
101 |
gaagatgttctaaattttgaggttctgaggttatgatgcgattgaaactagtaaaccatggccctttaaatctaaaagtgccattttgatgtttaagtgt |
200 |
Q |
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| T |
13886987 |
gaagatgttctaaattttgaggttctgaggttatgatgcaattgaaacttgtgaaccatggccctttgaatctaaaggttccattttgatgtttaagtgt |
13886888 |
T |
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| Q |
201 |
atcggttatgccttcatacatgttggttttgagtcctat |
239 |
Q |
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| T |
13886887 |
ttcggttatgccttcatacatgttggttttgagtcctat |
13886849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 13898133 - 13898353
Alignment:
| Q |
17 |
cagcgaaaataccgtctccaagtaaatcagaaactgtgtctttggagaagtttcctttagggaaaatattgaactttgttttgagaagatgttctaaatt |
116 |
Q |
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| T |
13898133 |
cagcgaaagtaccgtctccgagtaattcagatactatgtctctgaagtagtttcctttagggaaattactaaactttgttttgagaagatgttctaaatt |
13898232 |
T |
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| Q |
117 |
ttgaggttctgaggttatgatgcgattgaaactagtaaaccatggccctttaaatctaaaagtgccattttgatgtttaagtgtatcggttatgccttca |
216 |
Q |
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| T |
13898233 |
ttgaggttccgaggttacaacatagttgaggctagtgaaccatggccctctgaatctacatgttccattatgatgtttaagaatgtcagtgatccattca |
13898332 |
T |
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| Q |
217 |
tacatgttggttttgagtcct |
237 |
Q |
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|||| |||||||||||||||| |
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| T |
13898333 |
tacaggttggttttgagtcct |
13898353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 1035194 - 1035298
Alignment:
| Q |
21 |
gaaaataccgtctccaagtaaatcagaaactgtgtctttggagaagtttcctttagggaaaatattgaactttgttttgagaagatgttctaaattttga |
120 |
Q |
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||||||||||||||| ||||| ||||||||| ||||| || | ||||||||||||| ||| | |||||||||||||||||| ||||||||||||| || |
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| T |
1035194 |
gaaaataccgtctccgagtaattcagaaactatgtctctgaaatagtttcctttaggataaacagtgaactttgttttgagaacatgttctaaatttcga |
1035293 |
T |
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| Q |
121 |
ggttc |
125 |
Q |
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||||| |
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| T |
1035294 |
ggttc |
1035298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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