View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19851_low_15 (Length: 241)
Name: NF19851_low_15
Description: NF19851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19851_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 35227326 - 35227433
Alignment:
| Q |
18 |
actttgttctctcccaattattttccaagtgagtccaaacctgtttaattgctttgcttcaaagcaaaatataatttgcatcctaccattgacaggacta |
117 |
Q |
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| T |
35227326 |
actttgttctctcccaattattttgcaagtgagtccaaacctgtttaattgctttgcttcaaagcaaaatataatttgcatcctaccattgacaggacta |
35227425 |
T |
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| Q |
118 |
gtagaaat |
125 |
Q |
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|||||||| |
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| T |
35227426 |
gtagaaat |
35227433 |
T |
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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 35227435 - 35227486
Alignment:
| Q |
188 |
atttttggaatagtagacaaaataattattaaattatatattcttcgacatc |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
35227435 |
atttttggaatagtagacaaaataattattaaattatatatactacgacatc |
35227486 |
T |
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