View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19851_low_2 (Length: 608)
Name: NF19851_low_2
Description: NF19851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19851_low_2 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 502 - 592
Target Start/End: Original strand, 4386254 - 4386344
Alignment:
| Q |
502 |
accatgcttttttaacctgacaacaataatctttacctttttctctttgggtacctccttgtactcaaacattttatcaacaatttgaagt |
592 |
Q |
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| T |
4386254 |
accatgcttttttaacttgagagcaataatctttacctttttctctttgggtacctccttgtactcaaacactttatcaacaatttgaagt |
4386344 |
T |
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Target: scaffold0015 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 330
Target Start/End: Original strand, 28181 - 28233
Alignment:
| Q |
278 |
tcatgaatgtcacacttcatcataagcttttcaaactctctagtgtattcttc |
330 |
Q |
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| T |
28181 |
tcatgaatgtcgcacttcatcattaacttctcaaattctctagtgtattcttc |
28233 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 87908 - 87856
Alignment:
| Q |
278 |
tcatgaatgtcacacttcatcataagcttttcaaactctctagtgtattcttc |
330 |
Q |
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| T |
87908 |
tcatgaatgtcgcacttcatcattaacttctcaaattctctagtgtattcttc |
87856 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 11712762 - 11712710
Alignment:
| Q |
278 |
tcatgaatgtcacacttcatcataagcttttcaaactctctagtgtattcttc |
330 |
Q |
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| T |
11712762 |
tcatgaatgtcgcacttcatcattaacttctcaaattctctagtgtattcttc |
11712710 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 330
Target Start/End: Original strand, 16776427 - 16776479
Alignment:
| Q |
278 |
tcatgaatgtcacacttcatcataagcttttcaaactctctagtgtattcttc |
330 |
Q |
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| T |
16776427 |
tcatgaatgtcgcacttcatcattaacttctcaaattctctagtgtattcttc |
16776479 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 330
Target Start/End: Original strand, 5381999 - 5382051
Alignment:
| Q |
278 |
tcatgaatgtcacacttcatcataagcttttcaaactctctagtgtattcttc |
330 |
Q |
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| T |
5381999 |
tcatgaatgtcgcacttcatcattaacttctcaaaatctctagtgtattcttc |
5382051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 330
Target Start/End: Original strand, 13721766 - 13721818
Alignment:
| Q |
278 |
tcatgaatgtcacacttcatcataagcttttcaaactctctagtgtattcttc |
330 |
Q |
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| T |
13721766 |
tcatgaatgtcgcacttcatcattaacttctcaaattctctagtgtattcttc |
13721818 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 330
Target Start/End: Original strand, 14475529 - 14475581
Alignment:
| Q |
278 |
tcatgaatgtcacacttcatcataagcttttcaaactctctagtgtattcttc |
330 |
Q |
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| T |
14475529 |
tcatgaatgtcgcacttcatcattaacttctcaaattctctagtgtattcttc |
14475581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 42376780 - 42376728
Alignment:
| Q |
278 |
tcatgaatgtcacacttcatcataagcttttcaaactctctagtgtattcttc |
330 |
Q |
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| T |
42376780 |
tcatgaatgtcgcacttcatcattaacttctcaaattctctagtgtattcttc |
42376728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 278 - 330
Target Start/End: Original strand, 2795779 - 2795831
Alignment:
| Q |
278 |
tcatgaatgtcacacttcatcataagcttttcaaactctctagtgtattcttc |
330 |
Q |
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| T |
2795779 |
tcatgaatgtcgcacttcatcattaacttctcaaattctccagtgtattcttc |
2795831 |
T |
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