View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19851_low_5 (Length: 407)
Name: NF19851_low_5
Description: NF19851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19851_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 58 - 376
Target Start/End: Complemental strand, 38449079 - 38448758
Alignment:
| Q |
58 |
catgcttcctcaacatctcgattcatcaatttttctaatataacttcagcaataggagcaacttgatattgcaacaatgctgcaccaaaggtcctatcaa |
157 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38449079 |
catgcttcctcaacatctcgattcatccatttttctaatataacttcagcaataggagcaacttgatattgcaacaatgctgcaccaaaggtcctatcaa |
38448980 |
T |
|
| Q |
158 |
gttcaaccttttagtagcagatactgtccctaacttcagagaagaatctctcattgttttgagagaagttctgaaacatatgctgaacgtaacaatttct |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38448979 |
gttcaaccttttagtagcagatactgtccctaacttcagagaagaatctctcattgttttgagagaagttctgaaacatatgctgaacgtaacaatttct |
38448880 |
T |
|
| Q |
258 |
cca---atagtaacattcttaaatcagaagcttcgaaatgactttggaatgtacgctaatagaaaccattttgatgacatggaaataaaggatgattagg |
354 |
Q |
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||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38448879 |
ccaaatatagtaacattcttaaatcagaagcttggaaatgactttggaatttacgctaatagaaaccattttgatgacatggaaataaaggatgattagg |
38448780 |
T |
|
| Q |
355 |
aatcaataataatgagttccaa |
376 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
38448779 |
aatcaataataatgagttccaa |
38448758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 58 - 181
Target Start/End: Complemental strand, 38440691 - 38440567
Alignment:
| Q |
58 |
catgcttcctcaacatctcgattcatcaatttttctaatataacttcagcaataggagcaacttgatattgcaacaatgctgcaccaa-aggtcctatca |
156 |
Q |
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|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
38440691 |
catgcttcctcaacatcacgattcatccatttttctaatataacttcagcaataggagcaacttgatgttgcaacaatgctgcaccaaggggtcctatca |
38440592 |
T |
|
| Q |
157 |
agttcaaccttttagtagcagatac |
181 |
Q |
| |
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||||||||||| ||| ||||||||| |
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| T |
38440591 |
agttcaaccttgtagcagcagatac |
38440567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 38440467 - 38440418
Alignment:
| Q |
176 |
agatactgtccctaacttcagagaagaatctctcattgttttgagagaag |
225 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38440467 |
agatacagtccctaacttcatagaagaatctctcattgttttgagagaag |
38440418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 38449148 - 38449112
Alignment:
| Q |
15 |
agatgaaaacagtcttgaaaacaagtaaccatggcaa |
51 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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|
| T |
38449148 |
agatgaaaacagtcttgaaaacaagtaaccatggcaa |
38449112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 38440761 - 38440729
Alignment:
| Q |
15 |
agatgaaaacagtcttgaaaacaagtaaccatg |
47 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
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|
| T |
38440761 |
agatgaaaacaatcttgaaaacaagtaaccatg |
38440729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 307
Target Start/End: Complemental strand, 38448130 - 38448087
Alignment:
| Q |
264 |
gtaacattcttaaatcagaagcttcgaaatgactttggaatgta |
307 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| ||||||| |
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|
| T |
38448130 |
gtaacattcttaaaacagaagctttgaaatgactttagaatgta |
38448087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 38550139 - 38550182
Alignment:
| Q |
264 |
gtaacattcttaaatcagaagcttcgaaatgactttggaatgta |
307 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| ||||||| |
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|
| T |
38550139 |
gtaacattcttaaaacagaagctttgaaatgactttagaatgta |
38550182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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